Report for Sequence Feature Glyma07g32540
Feature Type: gene_model
Chromosome: Gm07
Start: 37423617
stop: 37427389
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma07g32540
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G28960 AT
Annotation by Michelle Graham. TAIR10: nudix hydrolase homolog 15 | chr1:10110020-10111607 REVERSE LENGTH=285
SoyBase E_val: 8.00E-58 ISS
GO:0006104 GO-bp
Annotation by Michelle Graham. GO Biological Process: succinyl-CoA metabolic process
SoyBase N/A ISS
GO:0006753 GO-bp
Annotation by Michelle Graham. GO Biological Process: nucleoside phosphate metabolic process
SoyBase N/A ISS
GO:0006914 GO-bp
Annotation by Michelle Graham. GO Biological Process: autophagy
SoyBase N/A ISS
GO:0015937 GO-bp
Annotation by Michelle Graham. GO Biological Process: coenzyme A biosynthetic process
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0008893 GO-mf
Annotation by Michelle Graham. GO Molecular Function: guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity
SoyBase N/A ISS
GO:0010945 GO-mf
Annotation by Michelle Graham. GO Molecular Function: CoA pyrophosphatase activity
SoyBase N/A ISS
GO:0016787 GO-mf
Annotation by Michelle Graham. GO Molecular Function: hydrolase activity
SoyBase N/A ISS
PTHR12992 Panther
MUTT-NUDIX-RELATED
JGI ISS
PF00293 PFAM
NUDIX domain
JGI ISS
UniRef100_D7KCZ0 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: F1K23.5 n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7KCZ0_ARALL
SoyBase E_val: 7.00E-57 ISS
UniRef100_I1KLR9 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KLR9_SOYBN
SoyBase E_val: 2.00E-125 ISS
Expression Patterns of Glyma07g32540
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma07g32540
Paralog Evidence Comments
Glyma13g24060 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma07g32540 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
References for Glyma07g32540
Coding sequences of Glyma07g32540
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma07g32540.1 sequence type=CDS gene model=Glyma07g32540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGATTTGCATTCTGAGAACATTACCAACGACAAGATCCTTATCACCCAGAGCATCTTCTTCCATCACCAAATTCATGGATTCTTCTTCCAACGCCAGCAGCATTGGAGGATCTCGGAGGCTCTTGGCGTTGGCGCAGCACCTTCGCCAGTACAAGGCACTGTCTTTCCCCGAAGATATTGTGGAGCAGAGCATCGAAGAGAGTGGTGGCAAGGTTGTTTCTCAGGTGGGGTTTCAAGAATCTGCCACCCCAATTGATCAAAACCCAGAGAAATTCAGACCCAAAAAAGCAGCTGTTTTGATCTGCCTCTTCGAAGGGGATGATGGGGATCTAAGGGTCATTCTCACTAAGCGCTCTTCCAAGCTCTCTACTCACTCGGGTGAAGTGGCATTGCCTGGTGGGAAAGCAAAGGAGGGGGATAAGGATGATGGGGACACTGCAAAAAGAGAGGCAAAGGAGGAGATTGGGTTGGACCCGGAACTTGTCAATGTTGTTACGTACTTGAACCATTCTTGTCTAAGCACCTCCTTAGAGTAG
Predicted protein sequences of Glyma07g32540
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma07g32540.1 sequence type=predicted peptide gene model=Glyma07g32540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MICILRTLPTTRSLSPRASSSITKFMDSSSNASSIGGSRRLLALAQHLRQYKALSFPEDIVEQSIEESGGKVVSQVGFQESATPIDQNPEKFRPKKAAVLICLFEGDDGDLRVILTKRSSKLSTHSGEVALPGGKAKEGDKDDGDTAKREAKEEIGLDPELVNVVTYLNHSCLSTSLE*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
