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Report for Sequence Feature Glyma07g32531

Feature Type:gene_model
Chromosome:Gm07
Start:37416802
stop:37421887
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma07g32531
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G33990AT Annotation by Michelle Graham. TAIR10: IQ-domain 9 | chr2:14360502-14361630 REVERSE LENGTH=263 SoyBaseE_val: 8.00E-82ISS
GO:0000394GO-bp Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation SoyBaseN/AISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009086GO-bp Annotation by Michelle Graham. GO Biological Process: methionine biosynthetic process SoyBaseN/AISS
GO:0048573GO-bp Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0005516GO-mf Annotation by Michelle Graham. GO Molecular Function: calmodulin binding SoyBaseN/AISS
PTHR10699Panther FAMILY NOT NAMED JGI ISS
PTHR10699:SF9Panther CALMODULIN BINDING JGI ISS
PF00612PFAM IQ calmodulin-binding motif JGI ISS
UniRef100_G7IK83UniRef Annotation by Michelle Graham. Most informative UniRef hit: IQ domain-containing protein n=1 Tax=Medicago truncatula RepID=G7IK83_MEDTR SoyBaseE_val: 5.00E-128ISS
UniRef100_UPI00023381F7UniRef Annotation by Michelle Graham. Best UniRef hit: UPI00023381F7 related cluster n=1 Tax=unknown RepID=UPI00023381F7 SoyBaseE_val: 0ISS

Expression Patterns of Glyma07g32531
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g32531 not represented in the dataset
Glyma07g32531 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g32531
ParalogEvidenceComments
Glyma13g24070 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g32531 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.07g204000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma07g32531
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma07g32531
>Glyma07g32531.2   sequence type=transcript   gene model=Glyma07g32531   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTTTTCTCTTCTATGCGTTTTGGTTTGTTTTCTTTTTCTCTCTGTATTCATATTTCCTTCCTCTTTACTTCTATGCTGATATTATTGTCCCCCACTTCCTTTTTTTTCATCCAGAAATCTTGTTGCCCAAGTGAGGGAAAAAGGGTTGCCTTGGACACTTCTCACCTTGTTCTCTGGGTTATGTTAATTTGAAAGAAGCTACTTGGCATCAAGAATGGGTTCAGGTGATTGGTTTAAGACAATAATTAGCTCAAGAAAATCAAAAGAAGGCACATCAAAGAAAGTAAAGACTAAGATTTATACAAGAAAAAAGTCCAATGGTTTAGCAAATGGAATCAAAAGCAAAAATCTAGAGTCAGATGGGGTATCAGTTGAAACTATTGCTGCAACAAGGATCCAAACAGCATTCCGAGCTTATAAGGCTAGAAAATATTTACACCGCTTGAGAGGATTCACAAAATTGAAGATCCAGACTCAAGGTTCCTCTGTTCAAAAACAAGCCGCCACAACTATAACTTATCTTCATTCATGGAGCAAGATACAGGCTGAGATTAGAGCTCGCCGAATATGTATGGTTACAGAAGACAGAATCAGGCGGAAGATAATACATTCTCAACTAAAACTTGAGTCCAAGATTCATGACCTGGAGGTGGAATGGTGTGGTGGTTCTGAAACCAAGAAGGAAATCCTTGCAAGGTTACATCACAGAGAAGAAGCTGCGGTCAAGCGGGAAAGAACCATGGCATATGCCTTCTCTCATCAGTGGAGGGCCAACTCTAGCCAAGGGCTAGGAAATTATGACCTTGGCAAAGCTAGTTGGAGTTGGAGCTGGAAGGATCGATGGATTGCTACGCGCCCTTGGGAAAGCCGTGTGCCAAGTGTAACCATTAGCCCCCCTAAAGATCAAAATAAGAAGCCGAACAAAGTTAAGAAGGATAAGAATTCATCAACATCAAAAAAACCAATTTCAGTTAAAACTCCTTCAGCTAATGCTAAAGGGACTAAATCCTTAGGTAATGCAAAAGGGACTACAAAAGCTAGAAGAAGATTGTCTTACCCTGCTGCCACAGAAAAAAGCAGTGCCTGAAGGAAAGCAATGAGTACTCAGAACAAAAGCATGCATATTTTATCAAAGTCTACATCGTGTTAACTTTAGCAGAGTCAAATTCAGTTTCAAGTGGTTACAGTGTGTGTGTTTAAAGATAAAAGGCAATCTGTTTTTCTTTATTCACTGGATTGCTTCCAATTTGTGCATATGAATGAGTGAAATTCAATGACCTTAGTGATAGAAAATGGACCAACAAACCTGCTTGTGTGTGTGATTTGTTGATTGGTTTTTATTTCTTCAATCTTGTATATTAGTGCAGTGAGGAGACAAATTATAGATAGATCAATTATCCCCTTCACCACCCCCCCCCCCCCCCCCCCGGTTG
Coding sequences of Glyma07g32531
>Glyma07g32531.1   sequence type=CDS   gene model=Glyma07g32531   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTCAGGTGATTGGTTTAAGACAATAATTAGCTCAAGAAAATCAAAAGAAGGCACATCAAAGAAAGTAAAGACTAAGATTTATACAAGAAAAAAGTCCAATGGTTTAGCAAATGGAATCAAAAGCAAAAATCTAGAGTCAGATGGGGTATCAGTTGAAACTATTGCTGCAACAAGGATCCAAACAGCATTCCGAGCTTATAAGGCTAGAAAATATTTACACCGCTTGAGAGGATTCACAAAATTGAAGATCCAGACTCAAGGTTCCTCTGTTCAAAAACAAGCCGCCACAACTATAACTTATCTTCATTCATGGAGCAAGATACAGGCTGAGATTAGAGCTCGCCGAATATGTATGGTTACAGAAGACAGAATCAGGCGGAAGATAATACATTCTCAACTAAAACTTGAGTCCAAGATTCATGACCTGGAGGTGGAATGGTGTGGTGGTTCTGAAACCAAGAAGGAAATCCTTGCAAGGTTACATCACAGAGAAGAAGCTGCGGTCAAGCGGGAAAGAACCATGGCATATGCCTTCTCTCATCAGTGGAGGGCCAACTCTAGCCAAGGGCTAGGAAATTATGACCTTGGCAAAGCTAGTTGGAGTTGGAGCTGGAAGGATCGATGGATTGCTACGCGCCCTTGGGAAAGCCGTGTGCCAAGTGTAACCATTAGCCCCCCTAAAGATCAAAATAAGAAGCCGAACAAAGTTAAGAAGGATAAGAATTCATCAACATCAAAAAAACCAATTTCAGTTAAAACTCCTTCAGCTAATGCTAAAGGGACTAAATCCTTAGGTAATGCAAAAGGGACTACAAAAGCTAGAAGAAGATTGTCTTACCCTGCTGCCACAGAAAAAAGCAGTGCCTGA

>Glyma07g32531.2   sequence type=CDS   gene model=Glyma07g32531   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTCAGGTGATTGGTTTAAGACAATAATTAGCTCAAGAAAATCAAAAGAAGGCACATCAAAGAAAGTAAAGACTAAGATTTATACAAGAAAAAAGTCCAATGGTTTAGCAAATGGAATCAAAAGCAAAAATCTAGAGTCAGATGGGGTATCAGTTGAAACTATTGCTGCAACAAGGATCCAAACAGCATTCCGAGCTTATAAGGCTAGAAAATATTTACACCGCTTGAGAGGATTCACAAAATTGAAGATCCAGACTCAAGGTTCCTCTGTTCAAAAACAAGCCGCCACAACTATAACTTATCTTCATTCATGGAGCAAGATACAGGCTGAGATTAGAGCTCGCCGAATATGTATGGTTACAGAAGACAGAATCAGGCGGAAGATAATACATTCTCAACTAAAACTTGAGTCCAAGATTCATGACCTGGAGGTGGAATGGTGTGGTGGTTCTGAAACCAAGAAGGAAATCCTTGCAAGGTTACATCACAGAGAAGAAGCTGCGGTCAAGCGGGAAAGAACCATGGCATATGCCTTCTCTCATCAGTGGAGGGCCAACTCTAGCCAAGGGCTAGGAAATTATGACCTTGGCAAAGCTAGTTGGAGTTGGAGCTGGAAGGATCGATGGATTGCTACGCGCCCTTGGGAAAGCCGTGTGCCAAGTGTAACCATTAGCCCCCCTAAAGATCAAAATAAGAAGCCGAACAAAGTTAAGAAGGATAAGAATTCATCAACATCAAAAAAACCAATTTCAGTTAAAACTCCTTCAGCTAATGCTAAAGGGACTAAATCCTTAGGTAATGCAAAAGGGACTACAAAAGCTAGAAGAAGATTGTCTTACCCTGCTGCCACAGAAAAAAGCAGTGCCTGA
Predicted protein sequences of Glyma07g32531
>Glyma07g32531.1   sequence type=predicted peptide   gene model=Glyma07g32531   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSGDWFKTIISSRKSKEGTSKKVKTKIYTRKKSNGLANGIKSKNLESDGVSVETIAATRIQTAFRAYKARKYLHRLRGFTKLKIQTQGSSVQKQAATTITYLHSWSKIQAEIRARRICMVTEDRIRRKIIHSQLKLESKIHDLEVEWCGGSETKKEILARLHHREEAAVKRERTMAYAFSHQWRANSSQGLGNYDLGKASWSWSWKDRWIATRPWESRVPSVTISPPKDQNKKPNKVKKDKNSSTSKKPISVKTPSANAKGTKSLGNAKGTTKARRRLSYPAATEKSSA*

>Glyma07g32531.2   sequence type=predicted peptide   gene model=Glyma07g32531   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSGDWFKTIISSRKSKEGTSKKVKTKIYTRKKSNGLANGIKSKNLESDGVSVETIAATRIQTAFRAYKARKYLHRLRGFTKLKIQTQGSSVQKQAATTITYLHSWSKIQAEIRARRICMVTEDRIRRKIIHSQLKLESKIHDLEVEWCGGSETKKEILARLHHREEAAVKRERTMAYAFSHQWRANSSQGLGNYDLGKASWSWSWKDRWIATRPWESRVPSVTISPPKDQNKKPNKVKKDKNSSTSKKPISVKTPSANAKGTKSLGNAKGTTKARRRLSYPAATEKSSA*






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