SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G38830 | AT | Annotation by Michelle Graham. TAIR10: Cysteinyl-tRNA synthetase, class Ia family protein | chr5:15545764-15548094 REVERSE LENGTH=511 | SoyBase | E_val: 1.00E-98 | ISS |
| GO:0006423 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cysteinyl-tRNA aminoacylation | SoyBase | N/A | ISS |
| GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0004817 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cysteine-tRNA ligase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| PTHR10890 | Panther | CYSTEINYL-TRNA SYNTHETASE | JGI | ISS | |
| PF01406 | PFAM | tRNA synthetases class I (C) catalytic domain | JGI | ISS | |
| UniRef100_G7IC96 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cysteinyl-tRNA synthetase n=2 Tax=Medicago truncatula RepID=G7IC96_MEDTR | SoyBase | E_val: 1.00E-128 | ISS |
| UniRef100_I1KLP8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1KLP8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma07g32200 not represented in the dataset |
Glyma07g32200 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g201400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g32200.1 sequence type=CDS gene model=Glyma07g32200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TGCAAAGGTGGAGGCCATTTTTTTCCCAATGCAAGTGAAAAGAAGAAGGTTGTAGTTTGGATCCAAATTTCAAGACTTTCATTGGAGCTATATAATGGAATGTTCCAATGGAAGCAAAAAGAGATCTTCAAAACCAAATTTGATGCCTATGACTTCAACCATCTCAGTCACGCTCGCGTCGCCGTTTCCTTCGATATCCTCTTAAGGTACCTTAAGCACTTGGGTTATGAGATTACATATGTGCGGAATTTCACTGATGTTGATGATAAGATAATTAAGCGAGCAAATGAGACTGGGGAGGATCCATTGTTGTTGAGCAACCATTTTTGTGATGAATACAATGTTGATATGGTTGATCTTCAATGCGAGACACCATCTAAGGAACCTCATGTTTCTGAACACCTTAATGAGATAAAGAACATGATAACCCAGATTATAAACAATGGCTATGCGTACAAAGTTAATGATGATGTATTCTATATTGTTGATAAATGCCCAAATTATGGTATGCTATCTAGACAACGGCTAGAACATAATAGAGTTGTAGAACGAGTAGTTGTGGACTCAAGAAAGCGCGAGCCTAGTTGGGACAACCCTTGGGATCCTGGAAGTCCTGGGTGGCACATTGAATGCAGTGCAATGAGTGCTTGTTATTTAACTCATAAATTTGATATCCATGGTGGTGGAATTGATTTAATCTTTCCTCATCATGAAAATGAGATTGCACAGAGCTGGGCTGCAGACCATGAGAGTCGTGTCAATTATTGGATGCATAATGGGCATGCAACATTTTCACTTTTTGCTAGATCACTGAGCTGCCCATTACAGATCTCCACTAAATTACTCAATCTCACAGCTAGAGAACTCATCAGATGCTATTTATATTTCGGACTCTTCAAGATTGTAAAGATGTTACCATTACTTCAAGCGGAAGCTAAGAAGAATGAAAAGGTACCTCAAATTAAAAAGGCTACCAAGGAATGCATTAAGAAGTTGAATGTTGAATGGTACTCTCCAAGAGGCCTTAAAATTTGTGAACACTTCTTTAAAGATGTTGAAGAAGAAAATGCAGAAAATAGCATAGTTGCAATTGATTCAATCAATATTGGAAGTGGAGAAAGAAGTTGGAAAAGTTTTGCACATCTTAGGATTATTATCCTGTAA
>Glyma07g32200.1 sequence type=predicted peptide gene model=Glyma07g32200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CKGGGHFFPNASEKKKVVVWIQISRLSLELYNGMFQWKQKEIFKTKFDAYDFNHLSHARVAVSFDILLRYLKHLGYEITYVRNFTDVDDKIIKRANETGEDPLLLSNHFCDEYNVDMVDLQCETPSKEPHVSEHLNEIKNMITQIINNGYAYKVNDDVFYIVDKCPNYGMLSRQRLEHNRVVERVVVDSRKREPSWDNPWDPGSPGWHIECSAMSACYLTHKFDIHGGGIDLIFPHHENEIAQSWAADHESRVNYWMHNGHATFSLFARSLSCPLQISTKLLNLTARELIRCYLYFGLFKIVKMLPLLQAEAKKNEKVPQIKKATKECIKKLNVEWYSPRGLKICEHFFKDVEEENAENSIVAIDSINIGSGERSWKSFAHLRIIIL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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