Glyma07g31880 - SoyBase

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Report for Sequence Feature Glyma07g31880

Feature Type:	gene_model
Chromosome:	Gm07
Start:	36863009
stop:	36865418
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g31880

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G33810	AT	Annotation by Michelle Graham. TAIR10: squamosa promoter binding protein-like 3 \| chr2:14305342-14305828 FORWARD LENGTH=131	SoyBase	E_val: 8.00E-40	ISS
GO:0009741	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to brassinosteroid stimulus	SoyBase	N/A	ISS
GO:0009827	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall modification	SoyBase	N/A	ISS
GO:0009860	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen tube growth	SoyBase	N/A	ISS
GO:0009886	GO-bp	Annotation by Michelle Graham. GO Biological Process: post-embryonic morphogenesis	SoyBase	N/A	ISS
GO:0009908	GO-bp	Annotation by Michelle Graham. GO Biological Process: flower development	SoyBase	N/A	ISS
GO:0009909	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of flower development	SoyBase	N/A	ISS
GO:0009911	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of flower development	SoyBase	N/A	ISS
GO:0010228	GO-bp	Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem	SoyBase	N/A	ISS
GO:0010229	GO-bp	Annotation by Michelle Graham. GO Biological Process: inflorescence development	SoyBase	N/A	ISS
GO:0010321	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of vegetative phase change	SoyBase	N/A	ISS
GO:0048481	GO-bp	Annotation by Michelle Graham. GO Biological Process: ovule development	SoyBase	N/A	ISS
GO:0048507	GO-bp	Annotation by Michelle Graham. GO Biological Process: meristem development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF03110	PFAM	SBP domain	JGI		ISS
UniRef100_G7ISD5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Squamosa promoter binding-like protein n=1 Tax=Medicago truncatula RepID=G7ISD5_MEDTR	SoyBase	E_val: 4.00E-49	ISS
UniRef100_I1KLM6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KLM6_SOYBN	SoyBase	E_val: 3.00E-102	ISS

Expression Patterns of Glyma07g31880

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g31880 not represented in the dataset	Glyma07g31880 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g31880

Paralog	Evidence	Comments
Glyma13g24590	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g31880 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g199000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g31880

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma07g31880

Limit To All Plant Sequences

>Glyma07g31880.2   sequence type=transcript   gene model=Glyma07g31880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTAGACGCCATGGAAGGATGAGAGATATATGGCCGCCATGGAAAGAATTAACAAGTCTTCAAAGAGGGTGATGACTTGGACAAATGAGAACCACTAGTACTCTACTACATTATTAGGCACGTATTTGTCTGTAGCCTTGGCTAGGTTTTCTTGAATCGTACACACCAAGGCTTATAGCTACTTTTTGTTTCAGACCTTTTCACTGTTACCCCTAGTTGTCAACAAAAAAAAATAAAAAATGGAGACTAAGACCAAGAAGACCCTATGTGGTCCTCGCTCATTAATTCTCTCATATCATTCATTCCTTTTTATATCAACTATTTATATGGTCATGTTTTCCTTATGTAACTTCTGAGCCTTTTTTTTCTTCTCATAACCTTCTTCTGGATCTCTCTGGAAGTTATTATGGACACAAGCAGGTATGAGGGAAAAAGGGTCTTGAGGTACAAAGAGGAAGATGAAAATGATGATGATGAAGAAGAAGAAGAGGTGAGTGAGGTGGGTTTTGGAGCAGACAGAAGAAGGAATAAGAGAGTAATGAGAGATCTCCATGGAAAGAGATCAGGGTCCAAAGGTGGAGGCTCAATGCCACCTTCTTGTCAAGTGGATAATTGTGATGCTGATCTGAGTGAAGCTAAGCAGTACCACAGAAGACACAAGGTTTGTGAGTACCATGCCAAAGCTCCTTCCGTACACATGGCAGGGCTGCAACAAAGGTTTTGCCAACAATGTAGCAGCCCTAGCTAGTTTTTGAGGAAGGGAGAAAACCCTTCAATTTGAATATGGATGATGATTGGTGGGGAAATCTTGTGTCTTGCGCCAAGGCTCACTCTCTGCTTCTTTTGTTTCCAAGTATTTTTCTTCCGATTATTCAGCAGACTTTGTGTGTATTAAACTATTCGTGACTTTATTGTTATTTTTTAGCAACTATAAAAACGGAAAATCTTGGGTATGGAGGATTCTCCACATTACCC

>Glyma07g31880.3   sequence type=transcript   gene model=Glyma07g31880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTAGACGCCATGGAAGGATGAGAGATATATGGCCGCCATGGAAAGAATTAACAAGTCTTCAAAGAGGGTGATGACTTGGACAAATGAGAACCACTAGTACTCTACTACATTATTAGGCACGTATTTGTCTGTAGCCTTGGCTAGGTTTTCTTGAATCGTACACACCAAGGCTTATAGCTACTTTTTGTTTCAGACCTTTTCACTGTTACCCCTAGTTGTCAACAAAAAAAAATAAAAAATGGAGACTAAGACCAAGAAGACCCTATGTGGTCCTCGCTCATTAATTCTCTCATATCATTCATTCCTTTTTATATCAACTATTTATATGGTCATGTTTTCCTTATGTAACTTCTGAGCCTTTTTTTTCTTCTCATAACCTTCTTCTGGATCTCTCTGGAAGTTATTATGGACACAAGCAGGTATGAGGGAAAAAGGGTCTTGAGGTACAAAGAGGAAGATGAAAATGATGATGATGAAGAAGAAGAAGAGGTGAGTGAGGTGGGTTTTGGAGCAGACAGAAGAAGGAATAAGAGAGTAATGAGAGATCTCCATGGAAAGAGATCAGGGTCCAAAGGTGGAGGCTCAATGCCACCTTCTTGTCAAGTGGATAATTGTGATGCTGATCTGAGTGAAGCTAAGCAGTACCACAGAAGACACAAGGTTTGTGAGTACCATGCCAAAGCTCCTTCCGTACACATGGCAGGGCTGCAACAAAGGTTTTGCCAACAATGTAGCAGGTTAATCTTTGCTGTGAATTCTGCCTGAGGGAAAAGATTCCATGAGCTATCAGAATTTGATGACTCAAAGAGGAGTTGTAGAACGCGGTTGGCTGGGCATAATGAGAGACGTCGCAAAAATGCAGTTGACTACCATGGAGAATGATTTCTTCTATGGGATGGACATTAACAATCATTGAGGCAAGCATGTGATTGAAATGAAATTTTCCATTGAAATCTTCATACTTAAATCATTGTTGCTGATCTCTAAGGATGCTCTCTATCTTCTGTCAATATTTTCATATGCAAACATTGTTGCTGTTCGTTACAATTATGAAAGGATAGTTCCACGTAGAACTTTTATTATATTTTGGTTTGAGAGAAATGGAAAGAATGAAGGGATTTTAATGAGTTCCATGGTTTGGTTAAAAGATAATAAGTGATGAGAGGAGGAATTTTAGTTCCTTGTTTAGTTCTAAAATAAAGGAAGGGGGAGAGATTTTGATC

Coding sequences of Glyma07g31880

Limit To All Plant Sequences

>Glyma07g31880.1   sequence type=CDS   gene model=Glyma07g31880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACACAAGCAGGTATGAGGGAAAAAGGGTCTTGAGGTACAAAGAGGAAGATGAAAATGATGATGATGAAGAAGAAGAAGAGGTGAGTGAGGTGGGTTTTGGAGCAGACAGAAGAAGGAATAAGAGAGTAATGAGAGATCTCCATGGAAAGAGATCAGGGTCCAAAGGTGGAGGCTCAATGCCACCTTCTTGTCAAGTGGATAATTGTGATGCTGATCTGAGTGAAGCTAAGCAGTACCACAGAAGACACAAGGTTTGTGAGTACCATGCCAAAGCTCCTTCCGTACACATGGCAGGGCTGCAACAAAGGTTTTGCCAACAATGTAGCAGATTCCATGAGCTATCAGAATTTGATGACTCAAAGAGGAGTTGTAGAACGCGGTTGGCTGGGCATAATGAGAGACGTCGCAAAAATGCAGTTGACTACCATGGAGAATGA

>Glyma07g31880.2   sequence type=CDS   gene model=Glyma07g31880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACACAAGCAGGTATGAGGGAAAAAGGGTCTTGAGGTACAAAGAGGAAGATGAAAATGATGATGATGAAGAAGAAGAAGAGGTGAGTGAGGTGGGTTTTGGAGCAGACAGAAGAAGGAATAAGAGAGTAATGAGAGATCTCCATGGAAAGAGATCAGGGTCCAAAGGTGGAGGCTCAATGCCACCTTCTTGTCAAGTGGATAATTGTGATGCTGATCTGAGTGAAGCTAAGCAGTACCACAGAAGACACAAGGTTTGTGAGTACCATGCCAAAGCTCCTTCCGTACACATGGCAGGGCTGCAACAAAGGTTTTGCCAACAATGTAGCAGCCCTAGCTAG

>Glyma07g31880.3   sequence type=CDS   gene model=Glyma07g31880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACACAAGCAGGTATGAGGGAAAAAGGGTCTTGAGGTACAAAGAGGAAGATGAAAATGATGATGATGAAGAAGAAGAAGAGGTGAGTGAGGTGGGTTTTGGAGCAGACAGAAGAAGGAATAAGAGAGTAATGAGAGATCTCCATGGAAAGAGATCAGGGTCCAAAGGTGGAGGCTCAATGCCACCTTCTTGTCAAGTGGATAATTGTGATGCTGATCTGAGTGAAGCTAAGCAGTACCACAGAAGACACAAGGTTTGTGAGTACCATGCCAAAGCTCCTTCCGTACACATGGCAGGGCTGCAACAAAGGTTTTGCCAACAATGTAGCAGGTTAATCTTTGCTGTGAATTCTGCCTGA

Predicted protein sequences of Glyma07g31880

Limit To All Plant Sequences

>Glyma07g31880.1   sequence type=predicted peptide   gene model=Glyma07g31880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDTSRYEGKRVLRYKEEDENDDDEEEEEVSEVGFGADRRRNKRVMRDLHGKRSGSKGGGSMPPSCQVDNCDADLSEAKQYHRRHKVCEYHAKAPSVHMAGLQQRFCQQCSRFHELSEFDDSKRSCRTRLAGHNERRRKNAVDYHGE*

>Glyma07g31880.2   sequence type=predicted peptide   gene model=Glyma07g31880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDTSRYEGKRVLRYKEEDENDDDEEEEEVSEVGFGADRRRNKRVMRDLHGKRSGSKGGGSMPPSCQVDNCDADLSEAKQYHRRHKVCEYHAKAPSVHMAGLQQRFCQQCSSPS*

>Glyma07g31880.3   sequence type=predicted peptide   gene model=Glyma07g31880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDTSRYEGKRVLRYKEEDENDDDEEEEEVSEVGFGADRRRNKRVMRDLHGKRSGSKGGGSMPPSCQVDNCDADLSEAKQYHRRHKVCEYHAKAPSVHMAGLQQRFCQQCSRLIFAVNSA*

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