SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G33520 | AT | Annotation by Michelle Graham. TAIR10: D111/G-patch domain-containing protein | chr1:12157488-12158876 REVERSE LENGTH=462 | SoyBase | E_val: 8.00E-140 | ISS |
| GO:0009870 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response signaling pathway, resistance gene-dependent | SoyBase | N/A | ISS |
| GO:0042742 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to bacterium | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| KOG4315 | KOG | G-patch nucleic acid binding protein | JGI | ISS | |
| PTHR15818 | Panther | G PATCH AND KOW-CONTAINING | JGI | ISS | |
| PTHR15818:SF2 | Panther | gb def: t54 protein | JGI | ISS | |
| PF01585 | PFAM | G-patch domain | JGI | ISS | |
| UniRef100_G7IA49 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Pre-mRNA-splicing factor spp2 n=1 Tax=Medicago truncatula RepID=G7IA49_MEDTR | SoyBase | E_val: 5.00E-146 | ISS |
| UniRef100_UPI000233806F | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233806F related cluster n=1 Tax=unknown RepID=UPI000233806F | SoyBase | E_val: 0 | ISS |
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Glyma07g31760 not represented in the dataset |
Glyma07g31760 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g197900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g31760.2 sequence type=CDS gene model=Glyma07g31760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTCTTGTTCTTGTTCTTGATTCGTGAAAGAAGAACTGAAAGCATGAAGCTCTCCTTCTCCGTCCCATCATCCAAACCCCACTCGAAGCCCAAAGCCGTCTCCAACACCTTCGACGACAATTCCACCTCCCAAAACGACACCGGCGGAACCAAATACCTCATCACCGAATTCGACCCTTCCAAACCCGCTCCCACCTCCGTCCCCAAAACCCTAATTCCCCCAATCCAAAACCAATGGCAACCCTTCAAGAAGATGAAGAATCTCCACCTCCCCACCGCCGCCGACGTCGAATCCCTCGCCTTCGAACTCCACACCGACGGGGACCAACCCGAATCCGACATCTCCTACGGCCTCAACGTCCGTGCCGACAATAATCCAGAAGGAAACAACAAAGACGACAGTGATGCTGCCGCGCCACGGCGTCGAGTTCCGCTGGAGGCCACGGCGCTGCAGAAGCTGAAAAGCGATCTGGAGAGGCTGCCGGAGGACCAGGGGATGGAGGAGTTCAAGGATGTCGCCGTCGAGGGTTACGGCGCGGCACTGCTCGCTGGCTACGGCTGGAAGGAAGGAATGGGGATTGGGAGGAACGCCAAGGAGGACGTGAAGGTGGTGGAGATCAAACGGAGAACTGCCAAGGAAGGATTAGGGTTTGTCGGTGATGCTCCTGCCGCGCTCGTTCTGAGCAACAATGAGAAGGACAACAAGAAGAAGGAGAAGAAGGAGAAGGTTGTTAGGATTGTTGGGGGAAGAGATTCTGGGTTGAAGGGTAGTGTTGTGTCTAGGATTGGGGATGATTATCTTGTTTTGGAGCTTTCAAGGAGTGGAGAGAAGGTGAAGGTGAAGGTGAAGGTTGGTGATGTTGCTGAATTGGGTTCTAAGGAGGAAGAGAGGTGTTTGAGGAAATTGAAGGAGTTGAAGACTCAGAGCGAGGAGGATAAAGTGTCAAAGAGTAAGCGCGGTAGGGATGAGGTGGAGGAGAAGAGAGGGGATCTTAATAGGAGAAAGGAGAAGAGAGTTGATGTTGGTAGGAAAGAGGAGAGGAGAGTGGTGGATCATAGGAAGGTTTCCTGGCTTACAAGTCACATTCGTGTTAGGGTGATTAGCCGGGATTTGAAAGGGGGGCGGTTGTATTTGAAGAAGGGGGAGGTTCTGGATGTTGTTGGGCCTACTACTTGTGATATTTCTATGGATGAGAACCGGGAGATTGTTCAAGGAGTGTCACAAGATGTTCTCGAGACAGTGATACCGAAACGTGGGGGACCGGTGCTTGTGTTGGCTGGTAAATACAAGGGTGTCTACGGGAGTCTGGCAGAGAGGGATTTTGACCGGGAAACTGCCATTGTTAGGGATGCTGATACCCATGAGCTGCTCAATGTGAAACTTGAACAGATTGCAGAGTATATAGGGGACCCAAGCTTATTGGGACATTGA
>Glyma07g31760.2 sequence type=predicted peptide gene model=Glyma07g31760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFLFLFLIRERRTESMKLSFSVPSSKPHSKPKAVSNTFDDNSTSQNDTGGTKYLITEFDPSKPAPTSVPKTLIPPIQNQWQPFKKMKNLHLPTAADVESLAFELHTDGDQPESDISYGLNVRADNNPEGNNKDDSDAAAPRRRVPLEATALQKLKSDLERLPEDQGMEEFKDVAVEGYGAALLAGYGWKEGMGIGRNAKEDVKVVEIKRRTAKEGLGFVGDAPAALVLSNNEKDNKKKEKKEKVVRIVGGRDSGLKGSVVSRIGDDYLVLELSRSGEKVKVKVKVGDVAELGSKEEERCLRKLKELKTQSEEDKVSKSKRGRDEVEEKRGDLNRRKEKRVDVGRKEERRVVDHRKVSWLTSHIRVRVISRDLKGGRLYLKKGEVLDVVGPTTCDISMDENREIVQGVSQDVLETVIPKRGGPVLVLAGKYKGVYGSLAERDFDRETAIVRDADTHELLNVKLEQIAEYIGDPSLLGH*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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