Glyma07g31760 - SoyBase

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Report for Sequence Feature Glyma07g31760

Feature Type:	gene_model
Chromosome:	Gm07
Start:	36715375
stop:	36717350
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g31760

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G33520	AT	Annotation by Michelle Graham. TAIR10: D111/G-patch domain-containing protein \| chr1:12157488-12158876 REVERSE LENGTH=462	SoyBase	E_val: 8.00E-140	ISS
GO:0009870	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response signaling pathway, resistance gene-dependent	SoyBase	N/A	ISS
GO:0042742	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to bacterium	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
KOG4315	KOG	G-patch nucleic acid binding protein	JGI		ISS
PTHR15818	Panther	G PATCH AND KOW-CONTAINING	JGI		ISS
PTHR15818:SF2	Panther	gb def: t54 protein	JGI		ISS
PF01585	PFAM	G-patch domain	JGI		ISS
UniRef100_G7IA49	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pre-mRNA-splicing factor spp2 n=1 Tax=Medicago truncatula RepID=G7IA49_MEDTR	SoyBase	E_val: 5.00E-146	ISS
UniRef100_UPI000233806F	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233806F related cluster n=1 Tax=unknown RepID=UPI000233806F	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g31760

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma07g31760 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g197900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g31760

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g31760

Limit To All Plant Sequences

>Glyma07g31760.2   sequence type=CDS   gene model=Glyma07g31760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCTTGTTCTTGTTCTTGATTCGTGAAAGAAGAACTGAAAGCATGAAGCTCTCCTTCTCCGTCCCATCATCCAAACCCCACTCGAAGCCCAAAGCCGTCTCCAACACCTTCGACGACAATTCCACCTCCCAAAACGACACCGGCGGAACCAAATACCTCATCACCGAATTCGACCCTTCCAAACCCGCTCCCACCTCCGTCCCCAAAACCCTAATTCCCCCAATCCAAAACCAATGGCAACCCTTCAAGAAGATGAAGAATCTCCACCTCCCCACCGCCGCCGACGTCGAATCCCTCGCCTTCGAACTCCACACCGACGGGGACCAACCCGAATCCGACATCTCCTACGGCCTCAACGTCCGTGCCGACAATAATCCAGAAGGAAACAACAAAGACGACAGTGATGCTGCCGCGCCACGGCGTCGAGTTCCGCTGGAGGCCACGGCGCTGCAGAAGCTGAAAAGCGATCTGGAGAGGCTGCCGGAGGACCAGGGGATGGAGGAGTTCAAGGATGTCGCCGTCGAGGGTTACGGCGCGGCACTGCTCGCTGGCTACGGCTGGAAGGAAGGAATGGGGATTGGGAGGAACGCCAAGGAGGACGTGAAGGTGGTGGAGATCAAACGGAGAACTGCCAAGGAAGGATTAGGGTTTGTCGGTGATGCTCCTGCCGCGCTCGTTCTGAGCAACAATGAGAAGGACAACAAGAAGAAGGAGAAGAAGGAGAAGGTTGTTAGGATTGTTGGGGGAAGAGATTCTGGGTTGAAGGGTAGTGTTGTGTCTAGGATTGGGGATGATTATCTTGTTTTGGAGCTTTCAAGGAGTGGAGAGAAGGTGAAGGTGAAGGTGAAGGTTGGTGATGTTGCTGAATTGGGTTCTAAGGAGGAAGAGAGGTGTTTGAGGAAATTGAAGGAGTTGAAGACTCAGAGCGAGGAGGATAAAGTGTCAAAGAGTAAGCGCGGTAGGGATGAGGTGGAGGAGAAGAGAGGGGATCTTAATAGGAGAAAGGAGAAGAGAGTTGATGTTGGTAGGAAAGAGGAGAGGAGAGTGGTGGATCATAGGAAGGTTTCCTGGCTTACAAGTCACATTCGTGTTAGGGTGATTAGCCGGGATTTGAAAGGGGGGCGGTTGTATTTGAAGAAGGGGGAGGTTCTGGATGTTGTTGGGCCTACTACTTGTGATATTTCTATGGATGAGAACCGGGAGATTGTTCAAGGAGTGTCACAAGATGTTCTCGAGACAGTGATACCGAAACGTGGGGGACCGGTGCTTGTGTTGGCTGGTAAATACAAGGGTGTCTACGGGAGTCTGGCAGAGAGGGATTTTGACCGGGAAACTGCCATTGTTAGGGATGCTGATACCCATGAGCTGCTCAATGTGAAACTTGAACAGATTGCAGAGTATATAGGGGACCCAAGCTTATTGGGACATTGA

Predicted protein sequences of Glyma07g31760

Limit To All Plant Sequences

>Glyma07g31760.2   sequence type=predicted peptide   gene model=Glyma07g31760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFLFLFLIRERRTESMKLSFSVPSSKPHSKPKAVSNTFDDNSTSQNDTGGTKYLITEFDPSKPAPTSVPKTLIPPIQNQWQPFKKMKNLHLPTAADVESLAFELHTDGDQPESDISYGLNVRADNNPEGNNKDDSDAAAPRRRVPLEATALQKLKSDLERLPEDQGMEEFKDVAVEGYGAALLAGYGWKEGMGIGRNAKEDVKVVEIKRRTAKEGLGFVGDAPAALVLSNNEKDNKKKEKKEKVVRIVGGRDSGLKGSVVSRIGDDYLVLELSRSGEKVKVKVKVGDVAELGSKEEERCLRKLKELKTQSEEDKVSKSKRGRDEVEEKRGDLNRRKEKRVDVGRKEERRVVDHRKVSWLTSHIRVRVISRDLKGGRLYLKKGEVLDVVGPTTCDISMDENREIVQGVSQDVLETVIPKRGGPVLVLAGKYKGVYGSLAERDFDRETAIVRDADTHELLNVKLEQIAEYIGDPSLLGH*

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