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Report for Sequence Feature Glyma07g31650

Feature Type:gene_model
Chromosome:Gm07
Start:36611551
stop:36616028
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma07g31650
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G30930AT Annotation by Michelle Graham. TAIR10: Ribosomal protein L21 | chr4:15050170-15051630 REVERSE LENGTH=270 SoyBaseE_val: 3.00E-74ISS
GO:0000741GO-bp Annotation by Michelle Graham. GO Biological Process: karyogamy SoyBaseN/AISS
GO:0001510GO-bp Annotation by Michelle Graham. GO Biological Process: RNA methylation SoyBaseN/AISS
GO:0006342GO-bp Annotation by Michelle Graham. GO Biological Process: chromatin silencing SoyBaseN/AISS
GO:0006412GO-bp Annotation by Michelle Graham. GO Biological Process: translation SoyBaseN/AISS
GO:0006606GO-bp Annotation by Michelle Graham. GO Biological Process: protein import into nucleus SoyBaseN/AISS
GO:0009553GO-bp Annotation by Michelle Graham. GO Biological Process: embryo sac development SoyBaseN/AISS
GO:0009555GO-bp Annotation by Michelle Graham. GO Biological Process: pollen development SoyBaseN/AISS
GO:0009560GO-bp Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation SoyBaseN/AISS
GO:0009567GO-bp Annotation by Michelle Graham. GO Biological Process: double fertilization forming a zygote and endosperm SoyBaseN/AISS
GO:0016572GO-bp Annotation by Michelle Graham. GO Biological Process: histone phosphorylation SoyBaseN/AISS
GO:0051567GO-bp Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0005840GO-cc Annotation by Michelle Graham. GO Cellular Compartment: ribosome SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003723GO-mf Annotation by Michelle Graham. GO Molecular Function: RNA binding SoyBaseN/AISS
GO:0003735GO-mf Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome SoyBaseN/AISS
KOG1686 KOG Mitochondrial/chloroplast ribosomal L21 protein JGI ISS
PTHR21349Panther 50S RIBOSOMAL PROTEIN L21 JGI ISS
PF00829PFAM Ribosomal prokaryotic L21 protein JGI ISS
UniRef100_G7KWG9UniRef Annotation by Michelle Graham. Most informative UniRef hit: 50S ribosomal protein L21 n=2 Tax=Medicago truncatula RepID=G7KWG9_MEDTR SoyBaseE_val: 2.00E-85ISS
UniRef100_I1KLJ8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KLJ8_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma07g31650
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g31650 not represented in the dataset
Glyma07g31650 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g31650
ParalogEvidenceComments
Glyma13g24790 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g31650 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.07g196700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma07g31650
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma07g31650
>Glyma07g31650.2   sequence type=transcript   gene model=Glyma07g31650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTGGGCTCGAATTATGTTGGGCCCAAGTGAGCCATATTTTATGGGCTAGTACTGTTTGTTTGTTTAGTGGGCTGAGGCAGGCCCATATGTTGTGGAGGAGGAGCATGTAGCGAGCGCGGGTACCGGTGGTTCCCCTGCGTCGTGTTGTGTGAGATCAAACCCTAGTTTTTAGACACTGCAACAGTAGCAGCAGCAACCATGGCGAGTAGGAGGTGCCTGCGAGCGTTAACTCAAACGAGACCGTTTCTCTTCCGAAAAGCATCCTCTCTTCGCTCACTCGCCGTGCTTCCATTTCCCAACTCCAACGCTTCTCCACACGCTTTCACCGCACGCGCCTCTGTTTTTGCGCAATGCCCGCACCTCCGTTGTTTCTCTTCCGACAAAAAAGACGACCACAGCGACGAAGAAGATGATAGTGACGAGGATTACGATGAAGAAGAGGATTATGTTGACGATGATGACGTCACTGTGTCAAGAGGGAAAAAAGTATACACGGCGGAGGAGAAGGAAGCGGAAGCGGCGGCTATTGGGTACAGAGTGGTGGGTCCTCTTCAAAAGGAGGAAGATAGCGTTTTTAAGCCTTACGAGCCTGTTTTCGCTGTTGTTCAGATTGGTTCGCACCAGTTTAAAGTAAGCAACAGAGACAGCATTTTCACTGAAAGATTGAAGTTTTGCGAAGTGAATGACAAGGCACTAGATGCAAAGGTAATTATTTTTAAGAAAAAGAGAAGGAAGAATTACCGAAGAACCAAAGGACATCGTCAGGAATTGACTAAGTTAAGGATAACTGATATTCAAGGAATTGAGAAACCTCAAAATGTATTGCCTGAAAAGCCTCCAAAACCTGCTAAGAAAGAAAAGGAAAAAGTTGCAGTTACTGCTTAAAAAGGATGTACCTACCCCTTTGGGTGTTGATGGTTATTGCTATCTTTTTGTCTCAGTGAGTTTTGATAGTTGGATGGTATGTAGTGAGCATGGTGATATTGTTGATAAGCTCTTCATTTTGCATCTGCAAATTCTAGGTAGGTGGAAATAGTCAACCATCCACTCAGTAGTCAGGTTTTGTAGAATTGTTACACAAATTTTCTTTTCCCTCTGTAGTGCTATAATTAGTGATTCAATGTTTGAACGGGTTTCGAGGTCTCAAGAAATTTAATAATGACTCCTGTAATTTTTGTTAGTAAAAAACATGATACTATATAATACATTTTACCAATTTCTGACAAAAAAAAATGCAAACTTTGACTATGTTTGGTTATCAGTTGAAGAAGTATTTTTGGATGCTACAAGTACTTTTGGAGAGTGAA
Coding sequences of Glyma07g31650
>Glyma07g31650.1   sequence type=CDS   gene model=Glyma07g31650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAGTAGGAGGTGCCTGCGAGCGTTAACTCAAACGAGACCGTTTCTCTTCCGAAAAGCATCCTCTCTTCGCTCACTCGCCGTGCTTCCATTTCCCAACTCCAACGCTTCTCCACACGCTTTCACCGCACGCGCCTCTGTTTTTGCGCAATGCCCGCACCTCCGTTGTTTCTCTTCCGACAAAAAAGACGACCACAGCGACGAAGAAGATGATAGTGACGAGGATTACGATGAAGAAGAGGATTATGTTGACGATGATGACGTCACTGTGTCAAGAGGGAAAAAAGTATACACGGCGGAGGAGAAGGAAGCGGAAGCGGCGGCTATTGGGTACAGAGTGGTGGGTCCTCTTCAAAAGGAGGAAGATAGCGTTTTTAAGCCTTACGAGCCTGTTTTCGCTGTTGTTCAGATTGGTTCGCACCAGTTTAAAGTAAGCAACAGAGACAGCATTTTCACTGAAAGATTGAAGTTTTGCGAAGTGAATGACAAGTTGATTTTGAACAAAGTACTATTGCTTGGCTCTGCTAGTCAGACAATTGTTGGCAGACCCATAGTACCAGATGCAGCTGTTCACGCTGTTGTTGAGGAGCATGCACTAGATGCAAAGGTAATTATTTTTAAGAAAAAGAGAAGGAAGAATTACCGAAGAACCAAAGGACATCGTCAGGAATTGACTAAGTTAAGGATAACTGATATTCAAGGAATTGAGAAACCTCAAAATGTATTGCCTGAAAAGCCTCCAAAACCTGCTAAGAAAGAAAAGGAAAAAGTTGCAGTTACTGCTTAA

>Glyma07g31650.2   sequence type=CDS   gene model=Glyma07g31650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAGTAGGAGGTGCCTGCGAGCGTTAACTCAAACGAGACCGTTTCTCTTCCGAAAAGCATCCTCTCTTCGCTCACTCGCCGTGCTTCCATTTCCCAACTCCAACGCTTCTCCACACGCTTTCACCGCACGCGCCTCTGTTTTTGCGCAATGCCCGCACCTCCGTTGTTTCTCTTCCGACAAAAAAGACGACCACAGCGACGAAGAAGATGATAGTGACGAGGATTACGATGAAGAAGAGGATTATGTTGACGATGATGACGTCACTGTGTCAAGAGGGAAAAAAGTATACACGGCGGAGGAGAAGGAAGCGGAAGCGGCGGCTATTGGGTACAGAGTGGTGGGTCCTCTTCAAAAGGAGGAAGATAGCGTTTTTAAGCCTTACGAGCCTGTTTTCGCTGTTGTTCAGATTGGTTCGCACCAGTTTAAAGTAAGCAACAGAGACAGCATTTTCACTGAAAGATTGAAGTTTTGCGAAGTGAATGACAAGGCACTAGATGCAAAGGTAATTATTTTTAAGAAAAAGAGAAGGAAGAATTACCGAAGAACCAAAGGACATCGTCAGGAATTGACTAAGTTAAGGATAACTGATATTCAAGGAATTGAGAAACCTCAAAATGTATTGCCTGAAAAGCCTCCAAAACCTGCTAAGAAAGAAAAGGAAAAAGTTGCAGTTACTGCTTAA
Predicted protein sequences of Glyma07g31650
>Glyma07g31650.1   sequence type=predicted peptide   gene model=Glyma07g31650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASRRCLRALTQTRPFLFRKASSLRSLAVLPFPNSNASPHAFTARASVFAQCPHLRCFSSDKKDDHSDEEDDSDEDYDEEEDYVDDDDVTVSRGKKVYTAEEKEAEAAAIGYRVVGPLQKEEDSVFKPYEPVFAVVQIGSHQFKVSNRDSIFTERLKFCEVNDKLILNKVLLLGSASQTIVGRPIVPDAAVHAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRITDIQGIEKPQNVLPEKPPKPAKKEKEKVAVTA*

>Glyma07g31650.2   sequence type=predicted peptide   gene model=Glyma07g31650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASRRCLRALTQTRPFLFRKASSLRSLAVLPFPNSNASPHAFTARASVFAQCPHLRCFSSDKKDDHSDEEDDSDEDYDEEEDYVDDDDVTVSRGKKVYTAEEKEAEAAAIGYRVVGPLQKEEDSVFKPYEPVFAVVQIGSHQFKVSNRDSIFTERLKFCEVNDKALDAKVIIFKKKRRKNYRRTKGHRQELTKLRITDIQGIEKPQNVLPEKPPKPAKKEKEKVAVTA*






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