SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G33770 | AT | Annotation by Michelle Graham. TAIR10: phosphate 2 | chr2:14277785-14281482 REVERSE LENGTH=907 | SoyBase | E_val: 0 | ISS |
| GO:0006301 | GO-bp | Annotation by Michelle Graham. GO Biological Process: postreplication repair | SoyBase | N/A | ISS |
| GO:0006817 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phosphate ion transport | SoyBase | N/A | ISS |
| GO:0016036 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation | SoyBase | N/A | ISS |
| GO:0055062 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phosphate ion homeostasis | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0004842 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity | SoyBase | N/A | ISS |
| GO:0016881 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: acid-amino acid ligase activity | SoyBase | N/A | ISS |
| KOG0417 | KOG | Ubiquitin-protein ligase | JGI | ISS | |
| PTHR24067 | Panther | UBIQUITIN-CONJUGATING ENZYME E2 | JGI | ISS | |
| PTHR24067:SF12 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00179 | PFAM | Ubiquitin-conjugating enzyme | JGI | ISS | |
| UniRef100_G7IPT0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin-conjugating enzyme family protein n=1 Tax=Medicago truncatula RepID=G7IPT0_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI00023381CB | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00023381CB related cluster n=1 Tax=unknown RepID=UPI00023381CB | SoyBase | E_val: 0 | ISS |
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Glyma07g31630 not represented in the dataset |
Glyma07g31630 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g24810 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g196500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g31630.1 sequence type=CDS gene model=Glyma07g31630 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATCCTATCATTAGTGATTCAGACTGGGAAACTTCCAGTGACAGCAACAGCAGTGAGGATCAAGAGGAAATCGATTTTCTATACGGTGGAAAAGCTCAGAGTATATTGTCAAGTTTAGAGGAAAGCATTGGTAGGATCGATGATTTTCTTTCATTTGAGAGAGCATTTGTTCATGGAGATGTGGTCTGCTCCTTGTCAGACCCATCTGGACAAATGGGGAGGGTCACAAGTGTGGATTTGTTTGTGGATTTGGAAAGTATTAAAGGAAAAGTATTAAAAAATGTGAACTCTAAGAAACTTTTGAGGATTCGCTCCATTTCAGAAGGTGATTATGTAATTAAGGGGCCGTGGCTTGGTCGAGTTCAGAGGGTGGTGGACAAAGTGACTGTATTGTTTGATGATGGAGCTAAATGTGATATCACTGCCTTGGAAAGAGAGAAGCTTTTACCACTGACTGGTAATTTTCCTGAAGACTGGCAGTTTCCATACTATCCAGGGCAGAGAGTAAAGGTTAAGTTCTCCAGTGCTTCTAAATCAACTAGATGGCTATGTGACACTTGGAGAGACAATCATGATGAAGGAGCTGTTTGTGCTGTGGAAGCAGGCTTGGTGTATGTTAATTGGATATCTCATGTTCTTGTGGGTTGCAATTTGAGTATGAGTGCTCCCAAATGCTGGCAAGATTCTAAAAACTTGACTGTGTTATCTTTTTTTTCACATGCAAACTGGCAGCTTGGTGATTGGTGCATGCTCTCAGTTGCAGACCAAAAGGAACAGATTACTCAACAAGCACCTATAGGTGATCTTACTATGGAGCATTGTGTGTCAAGAGGGTATAAGAGAAGCAACCTTAACTCTAACATTGGTGAGTTGTTTATAATTGGGAAGATAAAGACCAAAGTTGATGTTGTATGGCAAAATGGTGAACATACTTTGGGATTGGATCCAGAGAATTTACTCCCAGTGAATGTTATAAACACTCATGAATTTTGGCCTCATCAGTTTGTGCTGGAAAAAGGTGCTTCTGATGATCCTCCTAAAGCTAGCAGTCAAAGATGGGGTGTTGTCCAATGTATGGATGCAAAGGAGTGTACTGTACAGGTACAATGGAAAACAATGTCCACATCCGACCCAAATAATTTGGCTGGAGACAAATTGGAGGAAACTCTGAGTGCCTATGAACTTGTAGAGCACCCAGATTACTCCTGCTTTTTTGGTGATATTATGTTTAAGGCGGCTCAAAAACAGCTGGGTAACCAAGCTGATAAAGAACAAGCAAAACCAGTGACCAACTTTAATGCAGAAGCTGTTACTAAAAATGGGAACCAAATGAGTTATCAGGATGAGTTCCCTGATAATCATTTCATGTCCTGCATTGGCAGCGTTACTGGTTTCCAAGATGGTGATGTGGAGGTTACATGGGCTACTGGTTTCACAACCAAGGTTGCACCTTATGAAATTTTTCGGATTGAGAAACATGAAGGTTCAACTGTAACCCCCACTCCTTATGAGACAAATGTTGAAGAGTTAACTCATGAGATGATTGAACACAGGAGTCTACCTTCTTCTGACAAGAAGGGAAAGGACTTGTTAAATGGTGATGGTACTAGGAAGAATTGTGAAAAGAATCTTGGGGAATGTAGTTCCTTTTCCCTTCCTCGAGCTGCCTTTGAACTTTTCTCCAGCATTAAAGCCAGCATTTTCCAAACTTTTAGTGGAACTCTACTTTCAGGGGCAGTTTCCTCAGTACCTACATTTGAAAAGGAGAATGGATATGCTTATCCAGACAAGAAGGATTCGGAAACTTGTGACCTCTTTACTGAACAACATCCAATGACTGAGTTGCAATATACAGAAGACAAAACTTCATATCCTGAAAATATAAAGATTCATGAGAAGAATGATTTTCCATTTTCTTTAGACAGCAACAGTTCAAACCAGTTCAAGCAATTTGATGTTAAAGAAAATTGCCCTGACCACCATTTTTTTGTTCAGGGAAAAGGGTTGTCAATATCGCAGGTAAAAAGAAGTTGGGTGAAAAAGGTTCAGCAAGAATGGAGCATCCTCGAGAAAAATCTTCCTGAAACTATTTATGTTTGTGCGTTTGAAGAAAGAATGGATCTCATGCGAGCAGCTATTGTTGGTGCATCTGGAACCCCTTATCATGAAGGGTTGTTTTTCTTTGACATATGCTTCCCTCCGGAGTATCCCAACAAACCACCTATGGTGCACTACAATTCTGGAGGGCTCCGATTAAATCCTAATCTGTACGAGTCAGGAAAAATTTGTCTGAGTCTCCTGAACACTTGGACAGGCACAGGTACTGAAGTGTGGAACCCTGGAGCCTCCACTATTCTTCAAGTCCTTCTCTCTCTACAGGCACTTGTCCTTAATGAGAAGCCTTATTTCAATGAGGCTGGATATGACCAACAAATCGGCAGAGCTGAGGGAGAGAAAAACTCAGTCAGTTACAATGAAAATGCTCTCCTCGTCACAACCAAATCCATGATGTATCTATTAAGAAAGCCACCAAAGCATTTTGAAGAACTGGTGGAAGAGCACTTCAGAAAGCGCTACCAACATATACTTCTTGCTTGTAAGGCATATCTTGAAGGAGCTTCAATTGGATGTGCTTTTGATAGTGAAAAAAATGAACATGAAAACCAGAAGGGTACTTCAACAGGATTTAAAATTATGCTTGCTAAGCTCTTCCCCAAGCTTGTAGAGGCATTTTCTGATAAGGGAATTGATTGCAGTCAGTTTGTTGATCTGCAGAAATAA
>Glyma07g31630.1 sequence type=predicted peptide gene model=Glyma07g31630 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDPIISDSDWETSSDSNSSEDQEEIDFLYGGKAQSILSSLEESIGRIDDFLSFERAFVHGDVVCSLSDPSGQMGRVTSVDLFVDLESIKGKVLKNVNSKKLLRIRSISEGDYVIKGPWLGRVQRVVDKVTVLFDDGAKCDITALEREKLLPLTGNFPEDWQFPYYPGQRVKVKFSSASKSTRWLCDTWRDNHDEGAVCAVEAGLVYVNWISHVLVGCNLSMSAPKCWQDSKNLTVLSFFSHANWQLGDWCMLSVADQKEQITQQAPIGDLTMEHCVSRGYKRSNLNSNIGELFIIGKIKTKVDVVWQNGEHTLGLDPENLLPVNVINTHEFWPHQFVLEKGASDDPPKASSQRWGVVQCMDAKECTVQVQWKTMSTSDPNNLAGDKLEETLSAYELVEHPDYSCFFGDIMFKAAQKQLGNQADKEQAKPVTNFNAEAVTKNGNQMSYQDEFPDNHFMSCIGSVTGFQDGDVEVTWATGFTTKVAPYEIFRIEKHEGSTVTPTPYETNVEELTHEMIEHRSLPSSDKKGKDLLNGDGTRKNCEKNLGECSSFSLPRAAFELFSSIKASIFQTFSGTLLSGAVSSVPTFEKENGYAYPDKKDSETCDLFTEQHPMTELQYTEDKTSYPENIKIHEKNDFPFSLDSNSSNQFKQFDVKENCPDHHFFVQGKGLSISQVKRSWVKKVQQEWSILEKNLPETIYVCAFEERMDLMRAAIVGASGTPYHEGLFFFDICFPPEYPNKPPMVHYNSGGLRLNPNLYESGKICLSLLNTWTGTGTEVWNPGASTILQVLLSLQALVLNEKPYFNEAGYDQQIGRAEGEKNSVSYNENALLVTTKSMMYLLRKPPKHFEELVEEHFRKRYQHILLACKAYLEGASIGCAFDSEKNEHENQKGTSTGFKIMLAKLFPKLVEAFSDKGIDCSQFVDLQK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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