Glyma07g31620 - SoyBase

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Report for Sequence Feature Glyma07g31620

Feature Type:	gene_model
Chromosome:	Gm07
Start:	36592363
stop:	36594464
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g31620

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G33760	AT	Annotation by Michelle Graham. TAIR10: Pentatricopeptide repeat (PPR) superfamily protein \| chr2:14275800-14277551 FORWARD LENGTH=583	SoyBase	E_val: 0	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24015:SF118	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_D2STE6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat protein n=1 Tax=Gossypium hirsutum RepID=D2STE6_GOSHI	SoyBase	E_val: 0	ISS
UniRef100_I1KLJ6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1KLJ6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g31620

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g31620

Paralog	Evidence	Comments
Glyma13g24820	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g31620 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g196400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g31620

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g31620

Limit To All Plant Sequences

>Glyma07g31620.1   sequence type=CDS   gene model=Glyma07g31620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGGAAAAGAAAGGAGAAGAAAATCTGCAGAATACGAAGCAGTGGTAAGTGCAGGCCCGCACCTGAGACGCCTCCAACAAGCCCACGCTCACCTGGTGGTGACAGGCTGTCACCGGAGCCGCGCTCTGCTCACGAAGCTCCTCACGCTATCGTGCGCCGCGGGTTCCATCGCCTACACTCGCCGCCTCTTCCGTTCCGTTTCCGACCCAGATTCTTTCCTCTTCAATTCCCTCATCAAAGCCTCTTCAAACTTCGGTTTTTCCCTCGACGCCGTTTTCTTCTACCGTCGCATGCTACACTCTCGCATTGTTCCTTCCACTTACACCTTCACCTCCGTCATCAAGGCCTGCGCCGATCTTTCCCTCCTCCGACTCGGCACGATCGTTCATTCCCACGTTTTCGTTTCTGGGTATGCCTCAAATTCCTTCGTCCAAGCCGCATTAGTCACGTTCTACGCGAAATCGTGCACCCCTCGTGTTGCCCGGAAGGTATTCGATGAAATGCCTCAGAGAAGTATCATAGCTTGGAACTCCATGATTTCGGGGTACGAGCAGAACGGGCTTGCCAGTGAGGCTGTGGAGGTTTTTAACAAAATGCGTGAGTCCGGGGGCGAGCCGGATTCTGCGACTTTCGTTTCAGTGTTATCTGCTTGCTCTCAACTGGGATCGCTTGACTTGGGGTGTTGGCTGCATGAGTGCATTGTTGGGACTGGAATTAGAATGAACGTGGTTCTTGCTACCTCGTTGGTGAACATGTTTTCACGGTGTGGTGACGTGGGAAGAGCACGTGCAGTTTTTGATTCGATGAATGAAGGGAATGTTGTTTCATGGACGGCTATGATATCCGGTTACGGGATGCATGGCTATGGTGTTGAGGCAATGGAGGTTTTTCATCGAATGAAGGCATGTGGGGTGGTGCCTAATAGAGTCACTTATGTTGCTGTGTTATCTGCATGTGCGCATGCAGGGCTAATTAACGAAGGGCGTTTAGTGTTTGCAAGCATGAAGCAAGAGTATGGTGTGGTGCCAGGAGTGGAGCACCATGTTTGCATGGTTGATATGTTTGGGCGAGGTGGGTTGCTCAATGAGGCATACCAGTTTGTTAGAGGGCTTAGTTCTGAGGAGCTTGTTCCAGCGGTGTGGACTGCGATGCTTGGAGCTTGCAAGATGCATAAGAATTTTGACCTTGGTGTGGAGGTTGCTGAGAATCTCATCTCTGCAGAACCAGAGAATCCTGGCCATTATGTGTTGCTTTCTAACATGTATGCATTGGCGGGGAGGATGGATAGAGTGGAATCTGTTAGGAATGTGATGATCCAAAGAGGCCTTAAGAAGCAAGTGGGTTATAGCACCATAGATGTCGAAAACAGGAGTTACCTTTTTAGCATGGGTGACAAGTCTCACCCTGAGACTAATGAGATTTACTGTTATTTGGATGAGTTGATGTGGAGGTGTAAGGATGCAGGCTATGCACCTGCGCCCGAGTCCGCGATGCACGAGTTGGAAGAAGAAGAAAGGGAGTATGCCCTCAGATACCACAGTGAGAAGCTAGCAGTAGCATTTGGGCTGATGAAAACTTGCCATGGGGTGACTCTCAGGATTGTCAAGAACCTTAGGATATGTGAAGACTGTCATTCAGCTATTAAGTTCATCTCTGTTGTAATGAATAGAGAGATAATTGTTCGGGATAAACTTCGTTTCCATCATTTTAGAGAAGGCTCGTGTTCTTGTTCAGATTATTGGTGA

Predicted protein sequences of Glyma07g31620

Limit To All Plant Sequences

>Glyma07g31620.1   sequence type=predicted peptide   gene model=Glyma07g31620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGKERRRKSAEYEAVVSAGPHLRRLQQAHAHLVVTGCHRSRALLTKLLTLSCAAGSIAYTRRLFRSVSDPDSFLFNSLIKASSNFGFSLDAVFFYRRMLHSRIVPSTYTFTSVIKACADLSLLRLGTIVHSHVFVSGYASNSFVQAALVTFYAKSCTPRVARKVFDEMPQRSIIAWNSMISGYEQNGLASEAVEVFNKMRESGGEPDSATFVSVLSACSQLGSLDLGCWLHECIVGTGIRMNVVLATSLVNMFSRCGDVGRARAVFDSMNEGNVVSWTAMISGYGMHGYGVEAMEVFHRMKACGVVPNRVTYVAVLSACAHAGLINEGRLVFASMKQEYGVVPGVEHHVCMVDMFGRGGLLNEAYQFVRGLSSEELVPAVWTAMLGACKMHKNFDLGVEVAENLISAEPENPGHYVLLSNMYALAGRMDRVESVRNVMIQRGLKKQVGYSTIDVENRSYLFSMGDKSHPETNEIYCYLDELMWRCKDAGYAPAPESAMHELEEEEREYALRYHSEKLAVAFGLMKTCHGVTLRIVKNLRICEDCHSAIKFISVVMNREIIVRDKLRFHHFREGSCSCSDYW*

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