SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G27450 | AT | Annotation by Michelle Graham. TAIR10: Aluminium induced protein with YGL and LRDR motifs | chr4:13727665-13728683 REVERSE LENGTH=250 | SoyBase | E_val: 1.00E-113 | ISS |
| GO:0001666 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to hypoxia | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009862 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010310 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| PTHR11772 | Panther | ASPARAGINE SYNTHETASE | JGI | ISS | |
| PF12481 | PFAM | Aluminium induced protein | JGI | ISS | |
| PF12504 | PFAM | Aluminium induced protein | JGI | ISS | |
| UniRef100_G7ZZ88 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Stem-specific protein TSJT1 n=1 Tax=Medicago truncatula RepID=G7ZZ88_MEDTR | SoyBase | E_val: 1.00E-149 | ISS |
| UniRef100_UPI0001BA9133 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0001BA9133 related cluster n=1 Tax=unknown RepID=UPI0001BA9133 | SoyBase | E_val: 0 | ISS |
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Glyma07g31500 not represented in the dataset |
Glyma07g31500 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g24940 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g195300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g31500.3 sequence type=transcript gene model=Glyma07g31500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AGTTGGATAAAACTGCCAGCATGACCCAATCTCTTGCTCTCTCTCTACCTTCCAGTCTCTATATATATTTAGCCACATGCTATGAATGAATCATTCTACCTATTATCACTGTCCGTTTTCAAAGGCAATCACTGAATCTCATTCTCTATCTGAATCTATTTGGATTATTACTGATTTTGCAGTTAATTGCTCTATTGATACTTGTTCATTTCTTTGAGAAAGCCTATACACTCCTTGGAGAAGGGAAGAAAAGGAAAGTAGTGCTGACATTGGAAGGGAACAATACAAAGCCAAAGGAAGAGGCAAACATGTTGGCAATTTTCAAGGATAATTTGGTCAATCCACCAGAAGAGCTAAACAGCCCTGCTTCTTTGAATTCATCAAAAAGGTCTAAACTTCCAAATGAAATCCTTCAGGAATTCCAATCCTACAACCCCTCCAATGCTTTCTCCATGAGCTTTGGAAATGATGCTTTGCTAGCTTATTCCCCTTCAAACAAGCCCTCCATTCATAACGGGTTTTGTGTTTTGGATAACATACACTGCATTTTCCTTGGGAGCCTAAACAACCTAAGCAAGCTCATAAAGCAGTATGGTCTATCAAAGGGAACCAATGATGCTATGTTTATCATAGAAGCCTATAGGACACTTCGTGACAGGGGTCCATACCCAGCTGACCAGGTCCTCAAAGAACTTGAAGGCAGTTTTGGATTTGTGATATATGACAATAAGGATGGAACAGTTTTTACTGCTTCGGGTTCTAATGGACAAATTGAGCTTTTCTGGGGTGTTGCAGCTGATGGTTCTGTAGTTATTTCTGAGAATTTGGAGCTTATAAAAGCAAGCTGTGCTAAATCGTTTGCACCATTCCCCGCTGGGTGTATGCTTCATAGTGGGCATGGTCTAATGAGCTATGAGCATCCCACGAGGAAAATGAAGCCAATGCCTAGAACTGATAGCGAAGGGTTTATGTGTGGAGCCAATTTTTTGGTGGACTCTCAATCAAGGAAGTCAATGATGCCACGTGTTGGAAGTGAAGCCAATTGGGCTCCTTGGGGGGGCTCACAAGCTTGATTCATTCAACCATGACCAAATAAACACATTGAACAAAAAAAAAACCTACTATATAAGGGAACTTTTTTCTTTTCTATTTTTAATGATGTTAGCAACATAACGTAATGGGGTGACTTGACTGTTATTAGCACTTTTGGGATTTCATTTTCTTTTAGCTTCTATATATACAACAAATTTATGATTGGAAATTGAGAATGACTTTGGTCATTTGCATC
>Glyma07g31500.2 sequence type=CDS gene model=Glyma07g31500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAATCATTCTACCTATTATCACTGTCCGTTTTCAAAGGCAATCACTGAATCTCATTCTCTATCTGAATCTATTTGGATTATTACTGATTTTGCCTATACACTCCTTGGAGAAGGGAAGAAAAGGAAAGTAGTGCTGACATTGGAAGGGAACAATACAAAGCCAAAGGAAGAGGCAAACATGTTGGCAATTTTCAAGGATAATTTGGTCAATCCACCAGAAGAGCTAAACAGCCCTGCTTCTTTGAATTCATCAAAAAGGTCTAAACTTCCAAATGAAATCCTTCAGGAATTCCAATCCTACAACCCCTCCAATGCTTTCTCCATGAGCTTTGGAAATGATGCTTTGCTAGCTTATTCCCCTTCAAACAAGCCCTCCATTCATAACGGGTTTTGTGTTTTGGATAACATACACTGCATTTTCCTTGGGAGCCTAAACAACCTAAGCAAGCTCATAAAGCAGTATGGTCTATCAAAGGGAACCAATGATGCTATGTTTATCATAGAAGCCTATAGGACACTTCGTGACAGGGGTCCATACCCAGCTGACCAGGTCCTCAAAGAACTTGAAGGCAGTTTTGGATTTGTGATATATGACAATAAGGATGGAACAGTTTTTACTGCTTCGGGTTCTAATGGACAAATTGAGCTTTTCTGGGGTGTTGCAGCTGATGGTTCTGTAGTTATTTCTGAGAATTTGGAGCTTATAAAAGCAAGCTGTGCTAAATCGTTTGCACCATTCCCCGCTGGGTGTATGCTTCATAGTGGGCATGGTCTAATGAGCTATGAGCATCCCACGAGGAAAATGAAGCCAATGCCTAGAACTGATAGCGAAGGGTTTATGTGTGGAGCCAATTTTTTGGTGGACTCTCAATCAAGGAAGTCAATGATGCCACGTGTTGGAAGTGAAGCCAATTGGGCTCCTTGGGGGGGCTCACAAGCTTGA >Glyma07g31500.3 sequence type=CDS gene model=Glyma07g31500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTGGCAATTTTCAAGGATAATTTGGTCAATCCACCAGAAGAGCTAAACAGCCCTGCTTCTTTGAATTCATCAAAAAGGTCTAAACTTCCAAATGAAATCCTTCAGGAATTCCAATCCTACAACCCCTCCAATGCTTTCTCCATGAGCTTTGGAAATGATGCTTTGCTAGCTTATTCCCCTTCAAACAAGCCCTCCATTCATAACGGGTTTTGTGTTTTGGATAACATACACTGCATTTTCCTTGGGAGCCTAAACAACCTAAGCAAGCTCATAAAGCAGTATGGTCTATCAAAGGGAACCAATGATGCTATGTTTATCATAGAAGCCTATAGGACACTTCGTGACAGGGGTCCATACCCAGCTGACCAGGTCCTCAAAGAACTTGAAGGCAGTTTTGGATTTGTGATATATGACAATAAGGATGGAACAGTTTTTACTGCTTCGGGTTCTAATGGACAAATTGAGCTTTTCTGGGGTGTTGCAGCTGATGGTTCTGTAGTTATTTCTGAGAATTTGGAGCTTATAAAAGCAAGCTGTGCTAAATCGTTTGCACCATTCCCCGCTGGGTGTATGCTTCATAGTGGGCATGGTCTAATGAGCTATGAGCATCCCACGAGGAAAATGAAGCCAATGCCTAGAACTGATAGCGAAGGGTTTATGTGTGGAGCCAATTTTTTGGTGGACTCTCAATCAAGGAAGTCAATGATGCCACGTGTTGGAAGTGAAGCCAATTGGGCTCCTTGGGGGGGCTCACAAGCTTGA
>Glyma07g31500.2 sequence type=predicted peptide gene model=Glyma07g31500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNHSTYYHCPFSKAITESHSLSESIWIITDFAYTLLGEGKKRKVVLTLEGNNTKPKEEANMLAIFKDNLVNPPEELNSPASLNSSKRSKLPNEILQEFQSYNPSNAFSMSFGNDALLAYSPSNKPSIHNGFCVLDNIHCIFLGSLNNLSKLIKQYGLSKGTNDAMFIIEAYRTLRDRGPYPADQVLKELEGSFGFVIYDNKDGTVFTASGSNGQIELFWGVAADGSVVISENLELIKASCAKSFAPFPAGCMLHSGHGLMSYEHPTRKMKPMPRTDSEGFMCGANFLVDSQSRKSMMPRVGSEANWAPWGGSQA* >Glyma07g31500.3 sequence type=predicted peptide gene model=Glyma07g31500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLAIFKDNLVNPPEELNSPASLNSSKRSKLPNEILQEFQSYNPSNAFSMSFGNDALLAYSPSNKPSIHNGFCVLDNIHCIFLGSLNNLSKLIKQYGLSKGTNDAMFIIEAYRTLRDRGPYPADQVLKELEGSFGFVIYDNKDGTVFTASGSNGQIELFWGVAADGSVVISENLELIKASCAKSFAPFPAGCMLHSGHGLMSYEHPTRKMKPMPRTDSEGFMCGANFLVDSQSRKSMMPRVGSEANWAPWGGSQA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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