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Report for Sequence Feature Glyma07g31330

Feature Type:gene_model
Chromosome:Gm07
Start:36353123
stop:36357773
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma07g31330
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G61065AT Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF1218) | chr1:22490430-22491330 REVERSE LENGTH=180 SoyBaseE_val: 4.00E-77ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF06749PFAM Protein of unknown function (DUF1218) JGI ISS
UniRef100_C6TFG2UniRef Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6TFG2_SOYBN SoyBaseE_val: 4.00E-128ISS
UniRef100_Q6T7D3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Fiber protein Fb34 n=1 Tax=Gossypium barbadense RepID=Q6T7D3_GOSBA SoyBaseE_val: 7.00E-71ISS

Expression Patterns of Glyma07g31330
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g31330
ParalogEvidenceComments
Glyma13g25130 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g31330 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.07g193800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma07g31330
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma07g31330
>Glyma07g31330.4   sequence type=transcript   gene model=Glyma07g31330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAATAATAAAAAAAGTTATATAATAAAGATATAAGGCGCTATTCGCCGAATTTAAACGCCAGAAAGCTTACAAATGCAGCCAAAAGTTGCATACTTTAATTTGCTTTGCTTCTTTACTCCCCCATTTGCTTCCAAACAAAGGAAAAATCACTCTCATCTGAGAATCCAAACCTCCTCCTAATTTAAGTGGTGGGTCAGCTACTATGGCTTCCTCTCTGTTACTGGCGGTGGTGTTTGTGCTTGATCTGGTTGCTTTTGCTCTCGCTGTTGCTGCAGAGCAGAGAAGGAATACTGCCTCGTTAAATAAAGACAGTGCAGGTAGAAACTACTGTCAATATGACTCAGACATTGCAACCGGCCTAGGTGTGGGGTCCTTGTTTATCCTAGTTGCCAGTCAGGTGATCATTATGGTTGTAACTAGATGCCTGTGCTGTGGGAGAGCTATGAGACCCAGTGGATCAAGATCATGGTCAATTTGCTTGTTCATCACTAGCTGGGTGACATTTATCATTGCTGCTTCGTGCCTTCTAGCGGGTTCTGTGAGGAACGCGTACCACACCAAGTACCGTGATCTCATGGGAGAGAGAGCACCTTCATGCCAGACCTTGAGGAAGGGAGTGTTTGGAGCTGGAGCTGCCTTCATTGTTCTCACAGGCATAACCTCAGAGCTCTATTATGTTAGTTTTTCAAAAGCTAATAATAATGGTCCCCCTCCCTATGCTAGGGACACTGGTGTGAGGATGGCCAATTTTTAGTAGTAGTGTGGGGAAATTAATTAATTGTTTGTAATGTTAAGTTGGATGTGAAAGCCTACTTGTAAATTATTATGAACCTTATTTCCTTCCTTTTGACTCTTCAATGATCAATCATGTCACAATAGGTGCTGCCTCACGCAGCGGGTTACACTTGTGTACCCCTATATATCCTATAAGGTAACTTTTCAAAATAAAATGTGAAGTAAATATCTGTTAATAATATTTGTAATGTTTAATGTTAATGTCGTTCGTTAGGCTACAAAGTTAGTGACATTTAAAGAAAAGAAAAA
Coding sequences of Glyma07g31330
>Glyma07g31330.3   sequence type=CDS   gene model=Glyma07g31330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCCTCTCTGTTACTGGCGGTGGTGTTTGTGCTTGATCTGGTTGCTTTTGCTCTCGCTGTTGCTGCAGAGCAGAGAAGGAATACTGCCTCGTTAAATAAAGACAGTGCAGGTAGAAACTACTGTCAATATGACTCAGACATTGCAACCGGCCTAGGTGTGGGGTCCTTGTTTATCCTAGTTGCCAGTCAGGTGATCATTATGGTTGTAACTAGATGCCTGTGCTGTGGGAGAGCTATGAGACCCAGTGGATCAAGATCATGGTCAATTTGCTTGTTCATCACTAGCTGGGTGACATTTATCATTGCTGCTTCGTGCCTTCTAGCGGGTTCTGTGAGGAACGCGTACCACACCAAGTACCGTGATCTCATGGGAGAGAGAGCACCTTCATGCCAGACCTTGAGGAAGGGAGTGTTTGGAGCTGGAGCTGCCTTCATTGTTCTCACAGGCATAACCTCAGAGCTCTATTATGTTAGTTTTTCAAAAGCTAATAATAATGGTCCCCCTCCCTATGCTAGGGACACTGGTGTGAGGATGGCCAATTTTTAG

>Glyma07g31330.4   sequence type=CDS   gene model=Glyma07g31330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCCTCTCTGTTACTGGCGGTGGTGTTTGTGCTTGATCTGGTTGCTTTTGCTCTCGCTGTTGCTGCAGAGCAGAGAAGGAATACTGCCTCGTTAAATAAAGACAGTGCAGGTAGAAACTACTGTCAATATGACTCAGACATTGCAACCGGCCTAGGTGTGGGGTCCTTGTTTATCCTAGTTGCCAGTCAGGTGATCATTATGGTTGTAACTAGATGCCTGTGCTGTGGGAGAGCTATGAGACCCAGTGGATCAAGATCATGGTCAATTTGCTTGTTCATCACTAGCTGGGTGACATTTATCATTGCTGCTTCGTGCCTTCTAGCGGGTTCTGTGAGGAACGCGTACCACACCAAGTACCGTGATCTCATGGGAGAGAGAGCACCTTCATGCCAGACCTTGAGGAAGGGAGTGTTTGGAGCTGGAGCTGCCTTCATTGTTCTCACAGGCATAACCTCAGAGCTCTATTATGTTAGTTTTTCAAAAGCTAATAATAATGGTCCCCCTCCCTATGCTAGGGACACTGGTGTGAGGATGGCCAATTTTTAG
Predicted protein sequences of Glyma07g31330
>Glyma07g31330.3   sequence type=predicted peptide   gene model=Glyma07g31330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSLLLAVVFVLDLVAFALAVAAEQRRNTASLNKDSAGRNYCQYDSDIATGLGVGSLFILVASQVIIMVVTRCLCCGRAMRPSGSRSWSICLFITSWVTFIIAASCLLAGSVRNAYHTKYRDLMGERAPSCQTLRKGVFGAGAAFIVLTGITSELYYVSFSKANNNGPPPYARDTGVRMANF*

>Glyma07g31330.4   sequence type=predicted peptide   gene model=Glyma07g31330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSLLLAVVFVLDLVAFALAVAAEQRRNTASLNKDSAGRNYCQYDSDIATGLGVGSLFILVASQVIIMVVTRCLCCGRAMRPSGSRSWSICLFITSWVTFIIAASCLLAGSVRNAYHTKYRDLMGERAPSCQTLRKGVFGAGAAFIVLTGITSELYYVSFSKANNNGPPPYARDTGVRMANF*






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