Glyma07g31320 - SoyBase

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Report for Sequence Feature Glyma07g31320

Feature Type:	gene_model
Chromosome:	Gm07
Start:	36340524
stop:	36347558
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g31320

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G62050	AT	Annotation by Michelle Graham. TAIR10: homolog of yeast oxidase assembly 1 (OXA1) \| chr5:24924062-24926758 REVERSE LENGTH=429	SoyBase	E_val: 2.00E-147	ISS
GO:0006626	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to mitochondrion	SoyBase	N/A	ISS
GO:0045039	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein import into mitochondrial inner membrane	SoyBase	N/A	ISS
GO:0051205	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein insertion into membrane	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005743	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial inner membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0015450	GO-mf	Annotation by Michelle Graham. GO Molecular Function: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	SoyBase	N/A	ISS
KOG1239	KOG	Inner membrane protein translocase involved in respiratory chain assembly	JGI		ISS
PTHR12428	Panther	CYTOCHROME OXIDASE BIOGENESIS PROTEIN	JGI		ISS
PTHR12428:SF3	Panther	CYTOCHROME OXIDASE BIOGENESIS PROTEIN (OXA1 MITOCHONDRIAL)	JGI		ISS
PF02096	PFAM	60Kd inner membrane protein	JGI		ISS
UniRef100_B9GL61	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Inner membrane protein n=1 Tax=Populus trichocarpa RepID=B9GL61_POPTR	SoyBase	E_val: 0	ISS
UniRef100_I1KLH2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KLH2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g31320

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g31320

Paralog	Evidence	Comments
Glyma13g25140	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g31320 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g193700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g31320

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g31320

Limit To All Plant Sequences

>Glyma07g31320.1   sequence type=CDS   gene model=Glyma07g31320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATACCGACGGTGCCTCTTGATAAGAGGGAACCTCGTGGATCGGAGGTGCCATCCGTCTTTCAGTTATGTTCTCCACAGTGACCAGGGGAAGCACGAAAACACCAATGAAAAATCATCTTCAGGAGGGGATGGTGATTTTACCCAAACAAGGTCCTTTGGAAGCTCTCTTAATGGACCAATGGGTTTTTTTGCACATTCCCGTGATAGATTTCTTTCTCCGTGCTCCAGATATGGTTTCTGCCGATATATGTCGACGGTGAATCAGGGTTCGGATAAGATTAGTAGTGACGTAATGACTGATGTGGCTGATGTCCTCACCAACACAACCATGGATGCTGTAGTTTCTCAGGCTCCCGTTGTCAATGAGGTTGCTATTGCTGCTGCTGATTCTTTTTTGCCTGTACAGGCCTTGCAGTACGTTATAGATGCTGTGCATTCCTACACTGGCTTAAATTGGTGGGCAGCCATAGTTCTAACAACCCTGTTGATTCGAACCGCTACAGTTCCACTCTTAATAAATCAACTTAAGGCCACTTCTAAACTTACGTTAATGAGGCCTCATTTGGAAGAGATAAAGCAACAAATGGAGGGACTGACTATGGATCCCGTAGCTGTTGCTAAAGGTCAGCAGCAGATGAAGAAACTATTTAAGGAATATGGTGTGAGTCCTTTTACGCCATTGAAGGGACTCTTTATCCAAGGGCCTATTTTTGTTAGTTTTTTTCTTGCGATAACAAATATGGCTGAAAAAGTGCCATCATTCAAGCATGGCGGAGCTTCTTGGTTTATTGATCTCTCAACTCCTGATGCCTTGTACATTTTTCCAGCTTTGACAGCATTGTCATTCTTAATAACAGTAGAGTGTAATATGCAAGAAGGGATGGAAGGAAATCCTGTGGCTGGCACCATGAAAAATGTCTCTAGGGGTCTTGCTGTTCTTACAGTTCCTTTCACCATGGGATTTCCAAAGGCAATATTCTGTTACTGGGTTACATCAAATTTGTTTTCACTTGTGTATGGACTTGTGCTTAAAGTTCCTGGTGTAAAGAAAACTTTGGGTATTCCTGAAATACCTGTTGCACCACCCACCACCACCAGTGCTCCTCAATCTCCCTTTTCTATATTTCCAGCTCTAAAACAAGCTACATCATCAACAACAAATGGGCAAAGCTCAATTCCAGAAGAAGCTTCAAAACATTCAAATAAAAAAATATCTTCTTCTTCTGTTATTAGTCAAAGGCTTAGAAGTTTAGAGAAACAAGTGAAAGGAAGAAAGAAGAACCAGAAGTGA

Predicted protein sequences of Glyma07g31320

Limit To All Plant Sequences

>Glyma07g31320.1   sequence type=predicted peptide   gene model=Glyma07g31320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAYRRCLLIRGNLVDRRCHPSFSYVLHSDQGKHENTNEKSSSGGDGDFTQTRSFGSSLNGPMGFFAHSRDRFLSPCSRYGFCRYMSTVNQGSDKISSDVMTDVADVLTNTTMDAVVSQAPVVNEVAIAAADSFLPVQALQYVIDAVHSYTGLNWWAAIVLTTLLIRTATVPLLINQLKATSKLTLMRPHLEEIKQQMEGLTMDPVAVAKGQQQMKKLFKEYGVSPFTPLKGLFIQGPIFVSFFLAITNMAEKVPSFKHGGASWFIDLSTPDALYIFPALTALSFLITVECNMQEGMEGNPVAGTMKNVSRGLAVLTVPFTMGFPKAIFCYWVTSNLFSLVYGLVLKVPGVKKTLGIPEIPVAPPTTTSAPQSPFSIFPALKQATSSTTNGQSSIPEEASKHSNKKISSSSVISQRLRSLEKQVKGRKKNQK*

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