Glyma07g31220 - SoyBase

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Report for Sequence Feature Glyma07g31220

Feature Type:	gene_model
Chromosome:	Gm07
Start:	36191649
stop:	36194415
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g31220

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G61110	AT	Annotation by Michelle Graham. TAIR10: NAC domain containing protein 25 \| chr1:22516730-22518055 FORWARD LENGTH=323	SoyBase	E_val: 5.00E-105	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0007275	GO-bp	Annotation by Michelle Graham. GO Biological Process: multicellular organismal development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF02365	PFAM	No apical meristem (NAM) protein	JGI		ISS
UniRef100_B9RZ39	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9RZ39_RICCO	SoyBase	E_val: 1.00E-144	ISS
UniRef100_UPI0000E648D0	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0000E648D0 related cluster n=1 Tax=unknown RepID=UPI0000E648D0	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g31220

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma07g31220 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g192900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g31220

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g31220

Limit To All Plant Sequences

>Glyma07g31220.1   sequence type=CDS   gene model=Glyma07g31220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATAGCAGAGATTCATCATCGGGGTCTCAGCACCCACACCTTCCTCCAGGGTTTCGGTTCCACCCCACCGATGAAGAGCTCGTGGTTCACTACCTCAAGAGAAAAGCTGCTTCTGCACCCCTTCCCGTCGCCATCATCGCCGATGTTGATCTCTACAAGTTCGACCCTTGGGAGCTCCCAAGTAAAGCAACTTTTGGTGAGCAAGAGTGGTACTTTTTCAGCCCAAGGGATAGAAAATACCCAAATGGGGCTAGGCCCAATAGAGCTGCTACTTCTGGGTATTGGAAGGCCACTGGAACTGACAAGCCTATATTAACAACATATGGGCACCACAAAGTTGGAGTTAAGAAAGCACTTGTTTTTTATGGTGGAAAGCCTCCAAAAGGGGTTAAAACCAATTGGATCATGCATGAGTATAGGCTTGTTGATGATTCCTTTAATTCAAGCTCAAAACCGCCTCCTCTGGTTCCTCATAACAAGAAAAATTCCCTGAGGCTGGACGATTGGGTTTTGTGCCGAATATACAAGAAAAGCAACAACACCACCCTACCAAGGCCACCCATGATGGAGCATGAAGAGGAGCTTTCAATGGACAACATGCTACCAACGATGTCAACGTTGTCAATGGCTAACAACAAAATGCAAAACCCTAAACCTCCCTCGAGGAGCACGAGTTATGGTCCACTAGGACTTGAAAATGATGACAACTTCTTCGAGGGAGTCTTGGCCGTGGATCAAAGCATGCAAAATGGTTCTGATTCTCACATTTTCTCTCCAAACTCAAAGGGTGATAATAATAATAACAACAACAATAATGCTAGCAACTTTCCTATCAAACGTGCACTGATCACATCACAACTTTGGAACGAGACAGGGTCTCCGGGGTCTTCTTCTTCGTGCAAGCGATTTCATGGTGATCTTAATTGTGGATGCAGCAATGCTGAGGACAATAATGATTCCTTTATTTCCCTGCTAAGCCAGTTTCCTCAGAACGCAACTTTTCAGCCAAACGCGATTCATGGGTCCGTTGAGGATGATGGTGCGCCGAGGCAACAATTTCATCTTCATGGCATAAATTGGAACTGA

Predicted protein sequences of Glyma07g31220

Limit To All Plant Sequences

>Glyma07g31220.1   sequence type=predicted peptide   gene model=Glyma07g31220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSRDSSSGSQHPHLPPGFRFHPTDEELVVHYLKRKAASAPLPVAIIADVDLYKFDPWELPSKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILTTYGHHKVGVKKALVFYGGKPPKGVKTNWIMHEYRLVDDSFNSSSKPPPLVPHNKKNSLRLDDWVLCRIYKKSNNTTLPRPPMMEHEEELSMDNMLPTMSTLSMANNKMQNPKPPSRSTSYGPLGLENDDNFFEGVLAVDQSMQNGSDSHIFSPNSKGDNNNNNNNNASNFPIKRALITSQLWNETGSPGSSSSCKRFHGDLNCGCSNAEDNNDSFISLLSQFPQNATFQPNAIHGSVEDDGAPRQQFHLHGINWN*

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