Glyma07g30990 - SoyBase

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Report for Sequence Feature Glyma07g30990

Feature Type:	gene_model
Chromosome:	Gm07
Start:	35959606
stop:	35965096
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g30990

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G57580	AT	Annotation by Michelle Graham. TAIR10: Calmodulin-binding protein \| chr5:23314994-23317683 REVERSE LENGTH=647	SoyBase	E_val: 0	ISS
GO:0006487	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein N-linked glycosylation	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005516	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calmodulin binding	SoyBase	N/A	ISS
PF07887	PFAM	Calmodulin binding protein-like	JGI		ISS
UniRef100_G7JRT0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Calmodulin-binding protein n=1 Tax=Medicago truncatula RepID=G7JRT0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KLD8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KLD8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g30990

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g30990

Paralog	Evidence	Comments
Glyma08g06320	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g30990 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g190700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g30990

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g30990

Limit To All Plant Sequences

>Glyma07g30990.1   sequence type=CDS   gene model=Glyma07g30990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCACGGAAGGGCGCGAGAGAAGCGCGGTTTGGATTCGGCTTCCGCTGAAGAAGGTCAGCCTGATCGGAAACGACCTGCCTTGGCTAGTGTAATTGTTGAAGCCCTGAAGGTTGACAGTCTGCAGAAACTTTGCTCGTCACTGGAGCCTATTCTACGCAGAGTTGTTAGTGAAGAAGTTGAGCGTGCTTTGGCAAAACTAGGCCCTGCCAAGCTTAATACTGGCAGGTCTTCCCCAAAGCGGATAGAAGGCCCCGATGGCAAAAATTTACAATTGCACTTCAAGACCAGGCTATCCCTTCCCCTCTTTACTGGTGGGAAAGTGGAGGGTGAGCAAGGGACAGCCATACATATTGTTTTGATTGATGCAAATTCTGGCCATATTGTCACATCAGGGCCAGAGTCATGTGTCAGGCTAGATGTTATTGTACTAGAGGGAGATTTCAATAATGAGGATGATGATAATTGGGACGAAGAAGAGTTTGATAGTCATATTGTGAAAGAGCGGGAAGGAAAAAGACCTCTTCTAACTGGTGATCTGCAAGTCACACTGAAGGAGGGTGTAGGAACACTTGGTGAGCTTACATTTACAGACAACTCTAGCTGGATAAGGAGTAGGAAGTTTAGATTGGGGCTGAAAGTTGCCTCAGGTTGTTGTGAGGAAATGCGTATCCGTGAAGCCAAATCAGAACCTTTCACAGTTAAGGATCATCGTGGAGAATTATACAAGAAACACTACCCGCCTGCCTTGAATGATGAGGTCTGGAGACTGGAGAAGATTGGCAAGGATGGGTCATTTCACAAAAGGCTAAATAAAGCTGGAATATATATGGTTGAAGACTTCTTAAGACTTGTGGTCAGAGACCCTCAGAGATTGCGGAATATTCTTGGGAGTGGCATGTCAAATAAGATGTGGGATATTCTTGTTGAGCACGCAAAGACTTGTGTTCTCAGTGGAAAACTTTACGTATACTATCCTGAAGATGCAAGAAATGTGGGTGTTGTTTTCAATAATATTTATGAATTAAGTGGCTTAATTGCCAACGACCAATATTACTCAGCTGATTCTCTCTCTGAGAATCAAAAGGTTTATGTAGACACATTGGTGAAGAAGGCATATGATAATTGGATGCATGTTATTGAGTATGATGGGAAGTCTCTGATAAATGACAACGAGGATAAGGCTTTGGATACCACTCATCCTCAGGCTCCAATGACTTCCCATGAATATTCAAACTCACTTCAGCAGATATCCATCCCAGCTTTGCCACTTCCAGTACATCCTGGCCAGCCTTCAATGGATTCAGGAGTAACAGTTGGAGGTTATCATGATGGGACAGCTTCTAGATTCTCCTTGCAACCACATCCTAATCTTAATTCTTCCATTCAGTTTGATGATAATGCATTTCCACTACAAAACCAGTTGATGAGTGCTTCACACCATGCCCAACTTCCAAGAAATGAAAATGGGCAGACTATTGGTCCTCCACAATCATCCACGCACGGCTTTGAGCCTGTCAGCATTTCAAATCCTACATACAGAGGAGTTGAAGAGTACTTCCCAGAGGAGGAAATTCGTATTAGAAGTAATGAGATGCTAGAAAATGAAGATATGCAGCATCTACTCCGTATTTTTAACATGGGAGGCCAACCACATCCCACCTTTAATGCTCAGGATGATGGATACCCTAGTTCATCTACATACATTTCTGCAAACCCCATGGGCTACAATTTTGATGATGAACCAAACCGTTCCTCAGGCAAAGCTGTTGTGGGCTGGCTCAAGCTGAAGGCAGCTTTAAGATGGGGTATTTTTATTCGAAAGCAGGCTGCTGAGAGACGGGCACAACTCGTTGAATTGGATGACCCATAG

Predicted protein sequences of Glyma07g30990

Limit To All Plant Sequences

>Glyma07g30990.1   sequence type=predicted peptide   gene model=Glyma07g30990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHGRAREKRGLDSASAEEGQPDRKRPALASVIVEALKVDSLQKLCSSLEPILRRVVSEEVERALAKLGPAKLNTGRSSPKRIEGPDGKNLQLHFKTRLSLPLFTGGKVEGEQGTAIHIVLIDANSGHIVTSGPESCVRLDVIVLEGDFNNEDDDNWDEEEFDSHIVKEREGKRPLLTGDLQVTLKEGVGTLGELTFTDNSSWIRSRKFRLGLKVASGCCEEMRIREAKSEPFTVKDHRGELYKKHYPPALNDEVWRLEKIGKDGSFHKRLNKAGIYMVEDFLRLVVRDPQRLRNILGSGMSNKMWDILVEHAKTCVLSGKLYVYYPEDARNVGVVFNNIYELSGLIANDQYYSADSLSENQKVYVDTLVKKAYDNWMHVIEYDGKSLINDNEDKALDTTHPQAPMTSHEYSNSLQQISIPALPLPVHPGQPSMDSGVTVGGYHDGTASRFSLQPHPNLNSSIQFDDNAFPLQNQLMSASHHAQLPRNENGQTIGPPQSSTHGFEPVSISNPTYRGVEEYFPEEEIRIRSNEMLENEDMQHLLRIFNMGGQPHPTFNAQDDGYPSSSTYISANPMGYNFDDEPNRSSGKAVVGWLKLKAALRWGIFIRKQAAERRAQLVELDDP*

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