SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G21530 | AT | Annotation by Michelle Graham. TAIR10: Transducin/WD40 repeat-like superfamily protein | chr4:11450743-11455862 FORWARD LENGTH=777 | SoyBase | E_val: 0 | ISS |
| GO:0009790 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development | SoyBase | N/A | ISS |
| GO:0048481 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ovule development | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| KOG4640 | KOG | Anaphase-promoting complex (APC), subunit 4 | JGI | ISS | |
| PTHR13260 | Panther | ANAPHASE PROMOTING COMPLEX SUBUNIT 4 (APC4) (CYCLOSOME SUBUNIT 4) | JGI | ISS | |
| UniRef100_G7JRT3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Anaphase promoting complex subunit n=1 Tax=Medicago truncatula RepID=G7JRT3_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002337EE3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002337EE3 related cluster n=1 Tax=unknown RepID=UPI0002337EE3 | SoyBase | E_val: 0 | ISS |
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Glyma07g30983 not represented in the dataset |
Glyma07g30983 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g190600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g30983.1 sequence type=CDS gene model=Glyma07g30983 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAACCGACGAATCCTCTCGCGTGATTCCCTTTCAGCTTCAATTCGATAAACCCCTCGCTTCTCAGATCAAAATTGCGGAGTGGAATCCCGAGAAGGACTTGCTCGCCATGGTGACTGACGATTCTAAGATCTTGCTCCATCGTTTCAATTGGCAACGCTTGTGGACCATTACTCCAGGAAGATGCATAACATCTTTGTGTTGGCGTCCTGATGGAAAAGCAATTGCTGTTGGGCTTGATGACGGGACATTGTCACTGCATGATGTTGAGAATGGAAAGCTATTAAGAAGCTTAAAATCACATTGCGCTGCCATTATATGTCTCAACTGGGAGGAGGAGAGTCAGCTAATTACAGATGACTTTGGTCACACTTCCAAATATGAAGATAGAACCTCTCGTTTCTTTCCTCCTGCTCCAAGAGTTCCTCGGATGCCTGGATTGGTATCTGGGGATAATGGCTTCATGGATGATAGCGAAGATTCATTTCAGGAGCTGTCAAATTCTTCTCACCAACGATTCAACATCCTATGCAGTGCAGATAAAGATGGAAACATTTGTTTTAGTATATTTGGCATCTTCCCTATAGGGAAAGTTAACATACACAACCTCACTTTTCCTACTTTCTGTGATGGTTCAGAAATGAGTAATGGAGTTTCAAATGCTTTGATACACAAGGTTGCTTTATCAAAAGATCTTTGTCGTTTGATAGTCACGTGCTCAGGAGACCTTGTTAAAGTTGGTGATGACTTGGGAGAAATTCAAATGGTTGGGAACAATGAGCATGGTCTGCATTGCTTAGCACTGAACACAGCTATATTTTGGAATAGGAAAAATGAGCTTCACCAGGTAGCTCAACAAGCTTCTAACATAGAGGATTTGACTGAGGTTGTTCGGACATCATTATCAGTTATGTGTAGGCAATGGTCTGATGCCATGAACACATTTCAGGAGAAGTTCAGATCTTTGTCTACTCTGATAATAAATCATGGACTTGATTCGTCACCTCAAGAGGAGTTTCTGAGCCTTTTGGGTGGTGCAAGGACTAGCCCACCAGTTCATCAATTTCTCGTTAACACTCTTGGAGAAGTGGGTGTTAAGCGTATTTCAAAGGTTCTCTCCGGTGCAGGCAAAGAACTTCAACGTATTGTCTTGGACCACCTCCAGCCTGCTGTAGAAGTGATTGGATTCAGAATAGGAGAACTAAGAGGGCTTTCAAGATGGCGTGCACGCTATCACGGCATTGGCTTGGATGAATCACTTATTAACAATGCAACAGAAAAGGCTGGTATGCTACTTGTACAAGTTGAACGATTTATGAGGGTTCTTTCATCTGTTGTGCAGCAGTACTCAAACTTCTTCAACTGGCTATTGAAGTGTATAAAATTACTCATGTCAGAACCAAGTGACCAGCTTCTACCATATAACAGTGAACTTGTTATTGTATTCCTGAAGTTTCTCTATGAACAAGATCCAGTTAAACAATTGCTGGAAGTATCAGAAACAGAATATGAAGTTGAAATTGATTTGGAAACAATGCAGAGAGTTAGAGAATTAGTTCAGTTTGGGGGATTTGCTGACACTGAATATCTAAGGAGAACATTGGTTAAAGAATTTCAGCTGATGGAATTAAGCTTTAAAGAGGCTTTTGAAATGCCTTTTACCACAATATCAAGAAAGATACTTTGTGAGGATATACTACCTCTGTTTCCTCTTCCATCTTTGCCAAAATCATCTTCTTCCATGTGGATTCCCACTTCAGTATCATATTATGAGGATCCCTCTAGAGCTTCTGTGCCACCTTACTCTTGTCAAAACCAGTTTATTGATTACATATCTTTCCAAGTACCTGATGAGTGTTTCTCAGATATTGTAAATTGTATATGCATAGTCAGAGGATTCATGCATGACTCAGACTGTCTAAAGAAGGGGTATAGTTCTTTGGAAGCTGTACTGTTATGTGTTCCTGTTGATTATCAATGTGTGGATCTGTCTTTGTACAAGGATAGTCAAATCGTCCTGTTACTAAACAAAGCTACTAATACATCAGAAAGTGCTGGAGATGGTTGTATGATGATTCTGCAAGTAAGTGATCTACCATATGTCTCTATGTCAAGATCTGCTTGTATAGATGTTTGGAGGTTACCAGAACTAAAGGATTCTGTCGCTTACCTGAATATTGGGGATGAGAAATCTCGCACCATTCGTCATTCTGTAATTGCTCCCTTGGCAGTTAGTGCATCAAGAGGCGTGGCTTGTGTATTTGCTGCAACAAAGCGTGCTCTAGTCTACATTTTGGAGGAAGATGAAGATGAGGTCTCGGATGTAGAATAG
>Glyma07g30983.1 sequence type=predicted peptide gene model=Glyma07g30983 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high METDESSRVIPFQLQFDKPLASQIKIAEWNPEKDLLAMVTDDSKILLHRFNWQRLWTITPGRCITSLCWRPDGKAIAVGLDDGTLSLHDVENGKLLRSLKSHCAAIICLNWEEESQLITDDFGHTSKYEDRTSRFFPPAPRVPRMPGLVSGDNGFMDDSEDSFQELSNSSHQRFNILCSADKDGNICFSIFGIFPIGKVNIHNLTFPTFCDGSEMSNGVSNALIHKVALSKDLCRLIVTCSGDLVKVGDDLGEIQMVGNNEHGLHCLALNTAIFWNRKNELHQVAQQASNIEDLTEVVRTSLSVMCRQWSDAMNTFQEKFRSLSTLIINHGLDSSPQEEFLSLLGGARTSPPVHQFLVNTLGEVGVKRISKVLSGAGKELQRIVLDHLQPAVEVIGFRIGELRGLSRWRARYHGIGLDESLINNATEKAGMLLVQVERFMRVLSSVVQQYSNFFNWLLKCIKLLMSEPSDQLLPYNSELVIVFLKFLYEQDPVKQLLEVSETEYEVEIDLETMQRVRELVQFGGFADTEYLRRTLVKEFQLMELSFKEAFEMPFTTISRKILCEDILPLFPLPSLPKSSSSMWIPTSVSYYEDPSRASVPPYSCQNQFIDYISFQVPDECFSDIVNCICIVRGFMHDSDCLKKGYSSLEAVLLCVPVDYQCVDLSLYKDSQIVLLLNKATNTSESAGDGCMMILQVSDLPYVSMSRSACIDVWRLPELKDSVAYLNIGDEKSRTIRHSVIAPLAVSASRGVACVFAATKRALVYILEEDEDEVSDVE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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