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Report for Sequence Feature Glyma07g30950

Feature Type:gene_model
Chromosome:Gm07
Start:35924204
stop:35925795
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma07g30950
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G61340AT Annotation by Michelle Graham. TAIR10: F-box family protein | chr1:22628526-22629741 FORWARD LENGTH=185 SoyBaseE_val: 6.00E-26ISS
GO:0006970GO-bp Annotation by Michelle Graham. GO Biological Process: response to osmotic stress SoyBaseN/AISS
GO:0009611GO-bp Annotation by Michelle Graham. GO Biological Process: response to wounding SoyBaseN/AISS
GO:0009617GO-bp Annotation by Michelle Graham. GO Biological Process: response to bacterium SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0009693GO-bp Annotation by Michelle Graham. GO Biological Process: ethylene biosynthetic process SoyBaseN/AISS
GO:0009737GO-bp Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus SoyBaseN/AISS
GO:0009751GO-bp Annotation by Michelle Graham. GO Biological Process: response to salicylic acid stimulus SoyBaseN/AISS
GO:0009753GO-bp Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus SoyBaseN/AISS
GO:0009961GO-bp Annotation by Michelle Graham. GO Biological Process: response to 1-Aminocyclopropane-1-carboxylic Acid SoyBaseN/AISS
GO:0010200GO-bp Annotation by Michelle Graham. GO Biological Process: response to chitin SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_B9H220UniRef Annotation by Michelle Graham. Most informative UniRef hit: F-box family protein n=1 Tax=Populus trichocarpa RepID=B9H220_POPTR SoyBaseE_val: 3.00E-35ISS
UniRef100_I1KLD4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KLD4_SOYBN SoyBaseE_val: 6.00E-109ISS

Expression Patterns of Glyma07g30950
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g30950
ParalogEvidenceComments
Glyma08g06340 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g30950 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.07g190100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma07g30950
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma07g30950
>Glyma07g30950.1   sequence type=CDS   gene model=Glyma07g30950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGTTAGGGTTTGAGGGTTATAGTTATACCACAACACTTGGAAGGAAGAGGGTCGTGTTATTACACAATGAAGCTTCTTCTCTCAACTCTAATTCGGCGGTGAATCCATTGAAGAGAATGTGCAGCGGAAAATTCACTTTTGACTCTGAAAGGTCTCGCCTTGAGGCCCTTCCTCTTGATGTTCTGATTAGGGTGTTGTGTGGTGTCGATCATGAAGATTTGGAGCAACTTGTTCGTGTCTCAAAAACTGTTAGAGAAGCGGCTGAGATTGCTAGGAGAATGCATTTTGAGTATAGCACTCCAAAGAAGAAAACTTTTGCTCTTCCTAAACCGTTTGATATAGAGGGTGCTGGTGGGTTTGAGGAAATTGATACTCCAAATGCCCCATTGAGGAAACCTAAGTCAAAGCTGATTGGAAAGAATCTGGCTAGCATCTCAGTGGCATTGTTCGCTTCCGCTAATTAA
Predicted protein sequences of Glyma07g30950
>Glyma07g30950.1   sequence type=predicted peptide   gene model=Glyma07g30950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTLGFEGYSYTTTLGRKRVVLLHNEASSLNSNSAVNPLKRMCSGKFTFDSERSRLEALPLDVLIRVLCGVDHEDLEQLVRVSKTVREAAEIARRMHFEYSTPKKKTFALPKPFDIEGAGGFEEIDTPNAPLRKPKSKLIGKNLASISVALFASAN*






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