Glyma07g30940 - SoyBase

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Report for Sequence Feature Glyma07g30940

Feature Type:	gene_model
Chromosome:	Gm07
Start:	35916096
stop:	35917552
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g30940

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G26380	AT	Annotation by Michelle Graham. TAIR10: FAD-binding Berberine family protein \| chr1:9126901-9128508 REVERSE LENGTH=535	SoyBase	E_val: 2.00E-104	ISS
GO:0009723	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0071456	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to hypoxia	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0008762	GO-mf	Annotation by Michelle Graham. GO Molecular Function: UDP-N-acetylmuramate dehydrogenase activity	SoyBase	N/A	ISS
GO:0009055	GO-mf	Annotation by Michelle Graham. GO Molecular Function: electron carrier activity	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0016614	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on CH-OH group of donors	SoyBase	N/A	ISS
GO:0050660	GO-mf	Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding	SoyBase	N/A	ISS
PTHR11748	Panther	D-LACTATE DEHYDROGENASE	JGI		ISS
PTHR11748:SF29	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF01565	PFAM	FAD binding domain	JGI		ISS
UniRef100_G7JRU6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Reticuline oxidase-like protein n=1 Tax=Medicago truncatula RepID=G7JRU6_MEDTR	SoyBase	E_val: 2.00E-137	ISS
UniRef100_I1KLD3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KLD3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g30940

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g30940

Paralog	Evidence	Comments
Glyma08g06350	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g30940 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g190000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g30940

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g30940

Limit To All Plant Sequences

>Glyma07g30940.2   sequence type=CDS   gene model=Glyma07g30940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCACTATCACACCGTTATGGTTTCTCCTCACAACTCTAACCTTTCTACTTTCTGCAACTTCGGATTCATCACCCCTTGAAAACTTTCTCCAATGTCTTTCAAACCATTCAAGGCCCTTCAATATCAAAAGCCATTTACACCCCAAAAAATCCCTCACTTTTATCTATATTGCACAAACACACACACACAACCACAGATTTTATGCACCAACAGCACCAAAACCTTTGGCTATTGTGACGGCTCTTGATGAGTCACATGTGCAAGGCACTGTTGTATGTGCCAAGAGCAATGGAATTCAGATTAGGATCCGAAGTGGTGGCCATGACTGTGAAGGCCTTTCGTATGTTTCGGACGTGCCCTTTGTTGTTCTTGACATGTTTCATTTTGGATCAGTTGATGTGGACATTGAAAATGGAACAGAATGGGTTGAAACTGGTGCAACAATTGGTGAGGTTTACTATCACACTGCAGAGAGGAGTGGTGTTCATGCTTTCCCAGGTGGGGTGTGCCCCACTGTGGGGGCTGGTGGCCACTTCCTGGTGGTGGCTATGGAAATCTCATGTGTGGATAATATCATTGATGCAAGATTGGTTGATGTAAACGGTAACATACTTGACAGAAAGTCAATGGGGGAAGATCAGTTTTGGGCCATAAGAGGAGGTGGTGGGGGAAGTTTTGGTGTCATTCATTCATGGAAGATCAAGTTTGTTTTTGTGACTCCAAAAGTGACTGTTTTCAAAGTGATGAGAAACTTGGAGTTGGAAGATGGTGCAAAGGGTCTTGTTTACAAGTGGCAATTGATTGCAACAAAATTGCATGAAGATCTTTTCATAAGAGTGATGCATGATGTGGTTGATGGCACTCAAAATGCCAATAAGAAGACCATTCAGGTTACTTTTATTGGTTTGTTCTTGGGACAAGGTGATCAAATGTTGAGTTTGGTAAATGAGAGTTTTCCTGAATTGGGTTTGGAGCAAAAGAGTGTGAGGATGGAATGGAATCCTTATGGTGGAAAGATGCATGAGATTTCACCATCAGAAACTCCATTTCCTCATAGAGCAGGGAACTTGTTCTTGATTGAGTACTTAACATCTTGGGGGCAAGATGGGGTTGATGCAGGTAATCGTTACCTAAACATTTCAAGGTCATTCTATGAATTTATGACTCCATATGTTTCACATTCGCCAAGGGAGGCATTTCTCAATTATAGGGACCTTGATATAGGTGCCAATCATCCAAGTAATGCAACAAACATGAACATTGCTCAATGA

Predicted protein sequences of Glyma07g30940

Limit To All Plant Sequences

>Glyma07g30940.2   sequence type=predicted peptide   gene model=Glyma07g30940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSTITPLWFLLTTLTFLLSATSDSSPLENFLQCLSNHSRPFNIKSHLHPKKSLTFIYIAQTHTHNHRFYAPTAPKPLAIVTALDESHVQGTVVCAKSNGIQIRIRSGGHDCEGLSYVSDVPFVVLDMFHFGSVDVDIENGTEWVETGATIGEVYYHTAERSGVHAFPGGVCPTVGAGGHFLVVAMEISCVDNIIDARLVDVNGNILDRKSMGEDQFWAIRGGGGGSFGVIHSWKIKFVFVTPKVTVFKVMRNLELEDGAKGLVYKWQLIATKLHEDLFIRVMHDVVDGTQNANKKTIQVTFIGLFLGQGDQMLSLVNESFPELGLEQKSVRMEWNPYGGKMHEISPSETPFPHRAGNLFLIEYLTSWGQDGVDAGNRYLNISRSFYEFMTPYVSHSPREAFLNYRDLDIGANHPSNATNMNIAQ*

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