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Report for Sequence Feature Glyma07g30800

Feature Type:gene_model
Chromosome:Gm07
Start:35759181
stop:35762424
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma07g30800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G11380AT Annotation by Michelle Graham. TAIR10: PLAC8 family protein | chr1:3832695-3833921 FORWARD LENGTH=254 SoyBaseE_val: 4.00E-93ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF04749PFAM PLAC8 family JGI ISS
UniRef100_I1KLC0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KLC0_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q9LPZ7UniRef Annotation by Michelle Graham. Most informative UniRef hit: T23J18.4 n=1 Tax=Arabidopsis thaliana RepID=Q9LPZ7_ARATH SoyBaseE_val: 7.00E-36ISS

Expression Patterns of Glyma07g30800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g30800
ParalogEvidenceComments
Glyma08g06481 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g30800 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.07g188900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma07g30800
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma07g30800
>Glyma07g30800.1   sequence type=CDS   gene model=Glyma07g30800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGGATTTGGAGAAGAAGCAAGAGAGGGCAATGGAGGAAGAAGTCAAAGAGAGGTTGGTGGAGGGTGTGGCGGTTTTGGACTTTGACATGCTTTGTTCCACAGTGGCTTTGCGAGCTGCACATGGAAAATGGGGAAAGCTGGGAGCTGAAGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAAAGGAGGAGGGTGGTGAGTTTGGTGGTGTTCTGAGGATGTGGGAGGGTGAAGTTCTTGATTGTTTTGATGATCATCGCATAGCTATTGAATCCACGTGTTGTCCTTGCTACCGATTTGGGAAAAACATGAAGAGAGCTGGTTTTGGTTCTTGCTATATTCAGGCAGCAATTTATTTTCTTCTTGCTGTTGGTGCCTTTCTTAACTTCATTGCCTTTGCTGTCACGAGACGTCACTGTTATCTGTACCTGACTGTTGCCTTCGTTGTTTCTGTTGGAGCATATTTAGGATTCTTCCGGACACGTTTAAGAAAGAAATTCAACATCATGGGTAGTGATAGTTCCATGGACGATTGCGTTTACCATTTCGCCTGTCCTTGTTGTACATTATGTCAGGAGTCTAGAACGCTTGAGATGAACAATGTTCGAGATGGAACTTGGCATGGTCGGGGTGACAAAATATGCATTGGTGGCTTTAGCCAAAAAAGCAAAGGATTTTTCGAGTTAAATCCTCCTTCTATTGTCTCCGTCAACGATGAAAGTTCATTGGAAACAAAAACAAACACAAATGTCAGCAGTCCACCTTAA
Predicted protein sequences of Glyma07g30800
>Glyma07g30800.1   sequence type=predicted peptide   gene model=Glyma07g30800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGDLEKKQERAMEEEVKERLVEGVAVLDFDMLCSTVALRAAHGKWGKLGAEEEEEEEEEEEKEEGGEFGGVLRMWEGEVLDCFDDHRIAIESTCCPCYRFGKNMKRAGFGSCYIQAAIYFLLAVGAFLNFIAFAVTRRHCYLYLTVAFVVSVGAYLGFFRTRLRKKFNIMGSDSSMDDCVYHFACPCCTLCQESRTLEMNNVRDGTWHGRGDKICIGGFSQKSKGFFELNPPSIVSVNDESSLETKTNTNVSSPP*






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