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Report for Sequence Feature Glyma07g30750

Feature Type:gene_model
Chromosome:Gm07
Start:35704416
stop:35707827
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G54500AT Annotation by Michelle Graham. TAIR10: flavodoxin-like quinone reductase 1 | chr5:22124674-22126256 FORWARD LENGTH=204 SoyBaseE_val: 7.00E-129ISS
GO:0006970GO-bp Annotation by Michelle Graham. GO Biological Process: response to osmotic stress SoyBaseN/AISS
GO:0009733GO-bp Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus SoyBaseN/AISS
GO:0045892GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0005774GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0010181GO-mf Annotation by Michelle Graham. GO Molecular Function: FMN binding SoyBaseN/AISS
GO:0016491GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity SoyBaseN/AISS
GO:0016655GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor SoyBaseN/AISS
KOG3135 KOG 1,4-benzoquinone reductase-like; Trp repressor binding protein-like/protoplast-secreted protein JGI ISS
PF03358PFAM NADPH-dependent FMN reductase JGI ISS
UniRef100_B9T876UniRef Annotation by Michelle Graham. Most informative UniRef hit: Minor allergen Alt a, putative n=1 Tax=Ricinus communis RepID=B9T876_RICCO SoyBaseE_val: 4.00E-131ISS
UniRef100_C6TD38UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TD38_SOYBN SoyBaseE_val: 2.00E-146ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g30750 not represented in the dataset

Glyma07g30750 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma08g06570 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.07g188200 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma07g30750.1   sequence type=CDS   gene model=Glyma07g30750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTACCACTACCACTAAAGTTTACATTGTTTACTATTCTATGTACGGACATGTTGAGAAGCTAGCTGAAGAGATTAAAAAAGGAGCTGCTTCTGTTGAAGGAGTAGAAGCAAAGCTATGGCAGGTACCTGAAACACTGCCTCAAGAGGTCCTTGGGAAAATGGGAGCACCTCCAAAGAGTGATGTACCAATTATTACACCCAATGAGCTACCTGAGGCTGATGGCTTATTGCTTGGTTTCCCCACAAGATTTGGACTGATGGCTGCTCAATTCAAAGCTTTCCTGGATGCAACTGGAGGTCTATGGCGCACACAGGCACTAGCTGGAAAGCCTGCAGGAATCTTTTACAGCACTGGCTCTCAAGGAGGTGGACAAGAGACTACTCCGTTGACATCTATTACTCAGCTTGTTCACCATGGGATGATTTTTGTGCCCATTGGTTACACATTTGGGGCTGGTATGTTTGAGATGGAGAATGTGAAGGGTGGATCCCCATATGGTGCAGGTACCTATGCTGGGGATGGTTCCAGACAACCTACTGAGTTAGAATTAGCTCAAGCTTTTCATCAGGGGAAGTACTTTGCAGGCATTGCCAAGAAGCTCAAGGGATCATCTCAGTGA

>Glyma07g30750.1   sequence type=predicted peptide   gene model=Glyma07g30750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATTTTKVYIVYYSMYGHVEKLAEEIKKGAASVEGVEAKLWQVPETLPQEVLGKMGAPPKSDVPIITPNELPEADGLLLGFPTRFGLMAAQFKAFLDATGGLWRTQALAGKPAGIFYSTGSQGGGQETTPLTSITQLVHHGMIFVPIGYTFGAGMFEMENVKGGSPYGAGTYAGDGSRQPTELELAQAFHQGKYFAGIAKKLKGSSQ*







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
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