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Report for Sequence Feature Glyma07g30670

Feature Type:gene_model
Chromosome:Gm07
Start:35609516
stop:35614164
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma07g30670
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G11480AT Annotation by Michelle Graham. TAIR10: eukaryotic translation initiation factor-related | chr1:3864368-3866750 REVERSE LENGTH=578 SoyBaseE_val: 1.00E-99ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR13290Panther TRANSLATION INITIATION FACTOR 4H FAMILY JGI ISS
PTHR13290:SF6Panther JGI ISS
UniRef100_Q9LPY6UniRef Annotation by Michelle Graham. Most informative UniRef hit: T23J18.15 n=1 Tax=Arabidopsis thaliana RepID=Q9LPY6_ARATH SoyBaseE_val: 9.00E-91ISS
UniRef100_UPI0002337D7FUniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002337D7F related cluster n=1 Tax=unknown RepID=UPI0002337D7F SoyBaseE_val: 0ISS

Expression Patterns of Glyma07g30670
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g30670
ParalogEvidenceComments
Glyma08g06610 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g30670 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.07g187300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma07g30670
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma07g30670
>Glyma07g30670.1   sequence type=CDS   gene model=Glyma07g30670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGAAGAAGAAAGTTAGCGGCAACACCATGACGCTGAAGGACTTCCATGGCGGTTCTATTCCCTCTGATCTCCCTCTACCTTCTGCTCCTGGCGTGACTGTGAGGACTTCAGATCGTTCTGGTTTTGATCGGCCGTCGGCGTGGGGGATGCCGATGGGGCGATCGGATCATTGGTCTCGGCCGCACACGTCACCCGCGACTAGACATTATGATGACAAAACCCCGTTTCTGTCTAACACTGCCCCAATTGGCAGGAATTTTGATGAGGATGAGAGGAAGCCCCTTGATGGTGGTTCGGTGCCGCGTAGGACAATCAGTGATGAGAGCATCCGTGGTGGTCCACCTCCTCGTGTTGAGGTGAGGCCACCGGAGTATGGACTGGGAGGGAGTTCATTGGGCAGGCAAGTGGCTCCAGTGTCTCAAACTCCTGTTGGGGCAGGCAATTCATACTCTGCAAGGCTCACTGAAGCGGTGCATGTGGGAATGAATCCTCTAAGTTTAGGAGGTAGTAAGGAGCAGGGAACTGCAGGTGATGGTGGTGGTTATCCGAATGTGTGGTCAATGAGGAAAGAAGTGGCAAGTGCTGTTGAGCCAGAGCAACCGGCTTGGTCTAGTGCTAGTGCTGCTTCCAAGTTGGCTCATGCGAGTGCTCTTGAGAAGGTATCTTCTGGTAGATGGCAGTCAAAGGCTGTACATTATCAGACAGATGCTGAGGTGGTTAGATCTCCTGAATTGGAGAATAGACCACGTGTTAATGGCGTTGGTGCCTATAGTAGGATGGATGCAGTGGGTGAAAAGGAGTATTATGATGCAATGCTAGCTAGACACACTGAAAGGGGCTTAGGCATTGATAATCAGATGCAAGGTGGTAGGAATGAGTTACTAAATTATGAAAGGTCCAGGGTTTCCCGGTATTCAGATGTACGACCGACAAGTGCACCTCATCACTCTGGTGGGGTTCAGCTGGCTCGAAATGATGGCAAAATTGTTGGGTCTGATTTGCAGCACCGTATGCCTTCTGAACCAACTGAGCGACATAAACTGAAGTTGCTACCAAGGGCAAAGCCAGTGGAAAGTTCAGAACCTGCTGTCATGGATTATGCACAGGGTAATCGTCATGTTAATGATTCTGGCCATGTTGAAACCGTTTATCAGGCCCACGGCCATGCCAATTTTGTGAAGCCTGTATCAGCTGGGACTGACAGTGGGAAAGACTCAGGACAGCGCCCGAAACTGAATTTGAAGCCTCGGTCTCAGCCCATTGAACAGCTGGACGGAAACAGTGAAAGAGACAGGAATGTTTTATTTGGTGGAGCTCGCCCACGTGAACTAGTATTGAAGGAGCGAGGGATTGATGATGTTGCAATCAACAATTATGATGTGGTTGAGCATTCAAACAGGGTTGAAAACAATATTTCGAGGGTTGAGAAACTTCCTGACCATTCAACCCAGACTCGATATGGTGAAAAGACTGAGGACGCTCATCTTGATCAAAAGACAGGCAGAAAACCCGAAAGAAAGGAGCAAAGGGTAGATGGTGAAAGGGCTCATGCACAGAGGAGAAATTGGCGGGGTGATACTCGGAGAAACGGGAAGGAGAGCAATAGGCAGCCGCCGGCCCTTGAGAGGCAACCTTCACCTGAGACATGGCGTAAGCCTGCTGAGCAGCAGCCAAAATCAGCTCCAGGTGCTGCTGGCACACGGTATGGTAGAGCAGCTTCAGCGGTCGAACTTGCACAAGCATTCTCCAAATCTGTATCAGATCCAAAAGTAAATGATAAGTTTTCAGGTCAAAGGGGTCTGAACACTGGCAACAGCAGGACACAAGTGCCATTTTCACGGCTTGTTGGTCCTACATCAAGACCTCAGATCAATGGTTATTAA
Predicted protein sequences of Glyma07g30670
>Glyma07g30670.1   sequence type=predicted peptide   gene model=Glyma07g30670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSKKKVSGNTMTLKDFHGGSIPSDLPLPSAPGVTVRTSDRSGFDRPSAWGMPMGRSDHWSRPHTSPATRHYDDKTPFLSNTAPIGRNFDEDERKPLDGGSVPRRTISDESIRGGPPPRVEVRPPEYGLGGSSLGRQVAPVSQTPVGAGNSYSARLTEAVHVGMNPLSLGGSKEQGTAGDGGGYPNVWSMRKEVASAVEPEQPAWSSASAASKLAHASALEKVSSGRWQSKAVHYQTDAEVVRSPELENRPRVNGVGAYSRMDAVGEKEYYDAMLARHTERGLGIDNQMQGGRNELLNYERSRVSRYSDVRPTSAPHHSGGVQLARNDGKIVGSDLQHRMPSEPTERHKLKLLPRAKPVESSEPAVMDYAQGNRHVNDSGHVETVYQAHGHANFVKPVSAGTDSGKDSGQRPKLNLKPRSQPIEQLDGNSERDRNVLFGGARPRELVLKERGIDDVAINNYDVVEHSNRVENNISRVEKLPDHSTQTRYGEKTEDAHLDQKTGRKPERKEQRVDGERAHAQRRNWRGDTRRNGKESNRQPPALERQPSPETWRKPAEQQPKSAPGAAGTRYGRAASAVELAQAFSKSVSDPKVNDKFSGQRGLNTGNSRTQVPFSRLVGPTSRPQINGY*






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