Glyma07g30510 - SoyBase

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Report for Sequence Feature Glyma07g30510

Feature Type:	gene_model
Chromosome:	Gm07
Start:	35500849
stop:	35505835
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g30510

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G50090	AT	Annotation by Michelle Graham. TAIR10: D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein \| chr1:18554641-18556794 REVERSE LENGTH=367	SoyBase	E_val: 2.00E-165	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009081	GO-bp	Annotation by Michelle Graham. GO Biological Process: branched-chain amino acid metabolic process	SoyBase	N/A	ISS
GO:0009407	GO-bp	Annotation by Michelle Graham. GO Biological Process: toxin catabolic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004084	GO-mf	Annotation by Michelle Graham. GO Molecular Function: branched-chain-amino-acid transaminase activity	SoyBase	N/A	ISS
KOG0975	KOG	Branched chain aminotransferase BCAT1, pyridoxal phosphate enzymes type IV superfamily	JGI		ISS
PTHR11825	Panther	SUBGROUP IIII AMINOTRANSFERASE	JGI		ISS
PTHR11825:SF2	Panther	BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE	JGI		ISS
PF01063	PFAM	Aminotransferase class IV	JGI		ISS
UniRef100_I1KL95	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Branched-chain-amino-acid aminotransferase n=1 Tax=Glycine max RepID=I1KL95_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1KL95	UniRef	Annotation by Michelle Graham. Best UniRef hit: Branched-chain-amino-acid aminotransferase n=1 Tax=Glycine max RepID=I1KL95_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g30510

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g30510

Paralog	Evidence	Comments
Glyma08g06773	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g30510 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g186100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g30510

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma07g30510

Limit To All Plant Sequences

>Glyma07g30510.3   sequence type=transcript   gene model=Glyma07g30510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGCCTCTTTGCATCAAATCCTCAATACTTGTTTATCACTATCACTTCCCCTTCCTATCTCTGAAGCCATTCTCGTTCATTTTGTTTTTTTATCTTCTCTTTATCTCCCTCAACAAGATTCCTATAAAGTTCGTAGCGGCTTTCACACAACTTTAAGAAAATTGTATGGAGCCTTGCACCAATCAACTGACACCTCTTTTTAACGCAGAAAATCTCGTGAATCCGTGATCGCAAACAAAACAATGTCTCCCCCTTCTATGTTAGGCAACCGCAAAGACGGTTCTGAAATTGCTGTTGCGGAAAACTATGCTGACATTAATTGGGATGAGCTTGGATTTAGTCTAGTTCCAACAGATTACATGTATGTCATGAAATGTGCAAAAGGAGATAAGTTTTCACAAGGATCCATCGTTCCATTTGGAAACATAGAGATCAGCCCTTCTGCTGGAATCTTAAATTATGGACAGGGACTCTTTGAGGGGCTAAAAGCACATAGAACTGAAGATGGGCATGTACTTTTATTTCGACCAGATGAGAATGCTCAACGCATGAAACGAGGTGCAGATAGATTGTGTATGCCATCCCCATCTCCTGGCCAATTTGTTAATGCTGTAAAGCAGATAGTTATTGCCAACAAACGTTGGGTGCCTCCACCAGGGAAAGGGTCACTATATATTAGGCCATTGCTGATAGGAACAGGAGCATTGTTAGGGGTGGCACCTGCCCCTGAGTATACATTTCTTATTTATTGTTCTCCAGTTGGCAGCTACCAGAAGGGTGCACTAAATTTAAAGGTTGAGGATAAACTATATAGAGCAATATCTGGCTGTGGTGGAACTGGAGGGATCAAAAGTGTCACCAATTATGCCCCTGTTTATACTGCAATGGCTGATGCAAAGGCCAACGGATTCTCTGATGTGCTGTTCTTAGACTCAGCAACTGGAAAACATATAGAGGAGGCCTCAGCATGCAATGTATTTGTTTTGAAGGACAATGCTATCTCCACTCCTGCAATAGATGGAACCATCCTACCTGGTATCACCCGAAAATCCATCATTGACATTGCCATTGATTTGGGTTATCAGGTCATGGAACGTTCCGTATCAGTGGAGGAGATGCTAGGTGCTGATGAAATGTTCTGCACTGGAACTGCAGTTGTTGTCAACTCTGTTGCATCTGTAACTTATAAGGAAACAAGGGTGGATTACAAAACAGGCCCAGCAACATTGTCCTCAAAACTACGGAAAACACTTGTTGGAATTCAAACAGGGTGTCTTGAGGACAAAAAATCATGGACAGTCCGAGTAGATTCAACAATATAGCACCGTTTCCGTCACAAATAAAAAGAGAAAAATATTGCACCGTTTGTTAAATTATGCACGATTCTTATTTTATCCCTATCATCACTAAGTTCTCGCCTCTCGAGTTTGAAATACTTAAAAGGCAATGTTTTGTCTCATATAGTAATTTTATCCTATTCAAATAAAATTATGTGTAACATACCGTGGACATGTGATCCAGAAGAAAAAGTAATAAGTTGTTACTCTTTTATAGTTTTTACATAATATTTATATCCCTAATCTTCTAAATTTAATCATCATCTGTTTCTTTTAATTATGAATTTTTGTTTTCGTGTTACATTTGTCTTCT

Coding sequences of Glyma07g30510

Limit To All Plant Sequences

>Glyma07g30510.2   sequence type=CDS   gene model=Glyma07g30510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTCCCCCTTCTATGTTAGGCAACCGCAAAGACGGTTCTGAAATTGCTGTTGCGGAAAACTATGCTGACATTAATTGGGATGAGCTTGGATTTAGTCTAGTTCCAACAGATTACATGTATGTCATGAAATGTGCAAAAGGAGATAAGTTTTCACAAGGATCCATCGTTCCATTTGGAAACATAGAGATCAGCCCTTCTGCTGGAATCTTAAATTATGGACAGGGACTCTTTGAGGGGCTAAAAGCACATAGAACTGAAGATGGGCATGTACTTTTATTTCGACCAGATGAGAATGCTCAACGCATGAAACGAGGTGCAGATAGATTGTGTATGCCATCCCCATCTCCTGGCCAATTTGTTAATGCTGTAAAGCAGATAGTTATTGCCAACAAACGTTGGGTGCCTCCACCAGGGAAAGGGTCACTATATATTAGGCCATTGCTGATAGGAACAGGAGCATTGTTAGGGGTGGCACCTGCCCCTGAGTATACATTTCTTATTTATTGTTCTCCAGTTGGCAGCTACCAGAAGGGTGCACTAAATTTAAAGGTTGAGGATAAACTATATAGAGCAATATCTGGCTGTGGTGGAACTGGAGGGATCAAAAGTGTCACCAATTATGCCCCTGTTTATACTGCAATGGCTGATGCAAAGGCCAACGGATTCTCTGATGTGCTGTTCTTAGACTCAGCAACTGGAAAACATATAGAGGAGGCCTCAGCATGCAATGTATTTGTTTTGAAGGACAATGCTATCTCCACTCCTGCAATAGATGGAACCATCCTACCTGGTATCACCCGAAAATCCATCATTGACATTGCCATTGATTTGGGTTATCAGGTCATGGAACGTTCCGTATCAGTGGAGGAGATGCTAGGTGCTGATGAAATGTTCTGCACTGGAACTGCAGTTGTTGTCAACTCTGTTGCATCTGTAACTTATAAGGAAACAAGGGTGGATTACAAAACAGGCCCAGCAACATTGTCCTCAAAACTACGGAAAACACTTGTTGGAATTCAAACAGGGTGTCTTGAGGACAAAAAATCATGGACAGTCCGAGTAGATTCAACAATATAG

>Glyma07g30510.3   sequence type=CDS   gene model=Glyma07g30510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTCCCCCTTCTATGTTAGGCAACCGCAAAGACGGTTCTGAAATTGCTGTTGCGGAAAACTATGCTGACATTAATTGGGATGAGCTTGGATTTAGTCTAGTTCCAACAGATTACATGTATGTCATGAAATGTGCAAAAGGAGATAAGTTTTCACAAGGATCCATCGTTCCATTTGGAAACATAGAGATCAGCCCTTCTGCTGGAATCTTAAATTATGGACAGGGACTCTTTGAGGGGCTAAAAGCACATAGAACTGAAGATGGGCATGTACTTTTATTTCGACCAGATGAGAATGCTCAACGCATGAAACGAGGTGCAGATAGATTGTGTATGCCATCCCCATCTCCTGGCCAATTTGTTAATGCTGTAAAGCAGATAGTTATTGCCAACAAACGTTGGGTGCCTCCACCAGGGAAAGGGTCACTATATATTAGGCCATTGCTGATAGGAACAGGAGCATTGTTAGGGGTGGCACCTGCCCCTGAGTATACATTTCTTATTTATTGTTCTCCAGTTGGCAGCTACCAGAAGGGTGCACTAAATTTAAAGGTTGAGGATAAACTATATAGAGCAATATCTGGCTGTGGTGGAACTGGAGGGATCAAAAGTGTCACCAATTATGCCCCTGTTTATACTGCAATGGCTGATGCAAAGGCCAACGGATTCTCTGATGTGCTGTTCTTAGACTCAGCAACTGGAAAACATATAGAGGAGGCCTCAGCATGCAATGTATTTGTTTTGAAGGACAATGCTATCTCCACTCCTGCAATAGATGGAACCATCCTACCTGGTATCACCCGAAAATCCATCATTGACATTGCCATTGATTTGGGTTATCAGGTCATGGAACGTTCCGTATCAGTGGAGGAGATGCTAGGTGCTGATGAAATGTTCTGCACTGGAACTGCAGTTGTTGTCAACTCTGTTGCATCTGTAACTTATAAGGAAACAAGGGTGGATTACAAAACAGGCCCAGCAACATTGTCCTCAAAACTACGGAAAACACTTGTTGGAATTCAAACAGGGTGTCTTGAGGACAAAAAATCATGGACAGTCCGAGTAGATTCAACAATATAG

Predicted protein sequences of Glyma07g30510

Limit To All Plant Sequences

>Glyma07g30510.2   sequence type=predicted peptide   gene model=Glyma07g30510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSPPSMLGNRKDGSEIAVAENYADINWDELGFSLVPTDYMYVMKCAKGDKFSQGSIVPFGNIEISPSAGILNYGQGLFEGLKAHRTEDGHVLLFRPDENAQRMKRGADRLCMPSPSPGQFVNAVKQIVIANKRWVPPPGKGSLYIRPLLIGTGALLGVAPAPEYTFLIYCSPVGSYQKGALNLKVEDKLYRAISGCGGTGGIKSVTNYAPVYTAMADAKANGFSDVLFLDSATGKHIEEASACNVFVLKDNAISTPAIDGTILPGITRKSIIDIAIDLGYQVMERSVSVEEMLGADEMFCTGTAVVVNSVASVTYKETRVDYKTGPATLSSKLRKTLVGIQTGCLEDKKSWTVRVDSTI*

>Glyma07g30510.3   sequence type=predicted peptide   gene model=Glyma07g30510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSPPSMLGNRKDGSEIAVAENYADINWDELGFSLVPTDYMYVMKCAKGDKFSQGSIVPFGNIEISPSAGILNYGQGLFEGLKAHRTEDGHVLLFRPDENAQRMKRGADRLCMPSPSPGQFVNAVKQIVIANKRWVPPPGKGSLYIRPLLIGTGALLGVAPAPEYTFLIYCSPVGSYQKGALNLKVEDKLYRAISGCGGTGGIKSVTNYAPVYTAMADAKANGFSDVLFLDSATGKHIEEASACNVFVLKDNAISTPAIDGTILPGITRKSIIDIAIDLGYQVMERSVSVEEMLGADEMFCTGTAVVVNSVASVTYKETRVDYKTGPATLSSKLRKTLVGIQTGCLEDKKSWTVRVDSTI*

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