Glyma07g30440 - SoyBase

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Report for Sequence Feature Glyma07g30440

Feature Type:	gene_model
Chromosome:	Gm07
Start:	35448686
stop:	35453126
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g30440

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G58440	AT	Annotation by Michelle Graham. TAIR10: FAD/NAD(P)-binding oxidoreductase family protein \| chr1:21714094-21717246 REVERSE LENGTH=531	SoyBase	E_val: 0	ISS
GO:0000271	GO-bp	Annotation by Michelle Graham. GO Biological Process: polysaccharide biosynthetic process	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009228	GO-bp	Annotation by Michelle Graham. GO Biological Process: thiamine biosynthetic process	SoyBase	N/A	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0016126	GO-bp	Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process	SoyBase	N/A	ISS
GO:0016132	GO-bp	Annotation by Michelle Graham. GO Biological Process: brassinosteroid biosynthetic process	SoyBase	N/A	ISS
GO:0019745	GO-bp	Annotation by Michelle Graham. GO Biological Process: pentacyclic triterpenoid biosynthetic process	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0004506	GO-mf	Annotation by Michelle Graham. GO Molecular Function: squalene monooxygenase activity	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0050660	GO-mf	Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding	SoyBase	N/A	ISS
KOG1298	KOG	Squalene monooxygenase	JGI		ISS
PTHR10835	Panther	SQUALENE MONOOXYGENASE	JGI		ISS
PF08491	PFAM	Squalene epoxidase	JGI		ISS
UniRef100_G7JTY5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Squalene epoxidase n=1 Tax=Medicago truncatula RepID=G7JTY5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KL88	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KL88_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g30440

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g30440

Paralog	Evidence	Comments
Glyma08g06810	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g30440 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g185500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g30440

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g30440

Limit To All Plant Sequences

>Glyma07g30440.1   sequence type=CDS   gene model=Glyma07g30440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTATCAGTACATTCTAGGAGGGATTATGGCTTGTAGTTTTGCTTTTTTGTATGTTGTGTACAGTTTTGGAGCAAAGGTCACAGATTCAAGTTCAATACATGTAAAGAGTAATGAATGTGCAAAGATATCATCAGAGAATGGAATATGCTCACATGAGGATGCAGGAAGTGCTGACATCATTATTGTGGGTGCTGGGGTTGCTGGTTCAGCTCTTGCTTGCACTCTTGGAAAGGATGGACGGCGAGTGCATGTAATTGAAAGGGATTTAAGTGAACCTGACAGGATCGTGGGTGAATTGCTACAACCTGGGGGCTATCTTAAGTTAATTGAGTTGGGTCTTGAGGATTGTGTGGATGAAATTGATGCTCAGCAAGTCTTTGGCTATGCTCTGTATAAGGATGGCAAAAATACCAAACTCTCTTATCCCTTGGAAAATTTTGGCTCTGATATTTCTGGGAGAAGCTTTCATAATGGCCGTTTCATACAGAGAATGCGAGAAAAGGCTTCATCTCTTCCAAATGTAAAATTAGAACAAGGAACTGTCGCATCTCTACTTGAGGAAAAAGGAACCATCACTGGGGTGCACTACAAAACCAAAAGTGGTGAAGAGTTCACAGCAAAGGCTCCCCTCACCATAGTATGTGATGGTTGTTTTTCCAACTTGAGACGTTCTCTTTGCAATCCTAAGGTTGAAGTACCCTCTCATTTTGTTGGTCTGGTCTTGGAGAATTGTAATCTTCCATATGCAAATCATGGACACGTCATCTTAGGTGATCCTTCCCCCATTTTGTTTTATCCCATCAGTAGCACTGAGATTCGCTGTTTGGTTGATGTGCCTGGCCAAAAATTACCTTCCCTTGGTAGTGGTGAAATGGCCCGTTATTTGAAAACTGTGGTAGCTCCTCAGGTTCCTCCAGAGCTGTATGATTCATTTATTGCAGCTGTTGACAAAGGAAACATAAGAACCATGCCAAATAGAAGCATGCCTGCCTCACCTTATCCCACACCAGGTGCCCTTCTAATGGGAGATGCCTTCAATATGCGTCACCCTTTAACCGGAGGAGGAATGACTGTGGCTTTATCTGACATTGTTGTGCTAAGGGACTTACTTAAACCCCTTCATGATCTCCATGATGCTTCTGCTCTTTGCAGATACCTTGAATCATTCTACACCCTACGCAAGCCTGTAGCATCTACAATAAACACACTAGCCGGGGCATTGTACAAAGTTTTTTGTGCATCTCCTGATCCAGCTAGAAAGGAAATGCGCCAAGCATGTTTCGATTACTTGAGCCTTGGAGGTGTTTTCTCAGATGGACCAATAGCTCTACTCTCTGGTCTAAATCCTCGTCCATTGAGTTTGGTTCTCCATTTCTTCGCCGTCGCTATATATGGTGTTGGCCGCTTGCTCATACCATTTCCTTCTCCAAAACGGATGTGGATTGGAGCTAGATTGATTTCAGGTGCATCAGGCATCATTTTCCCCATTATTAAGGCTGAAGGGGTGAGACAAATGTTCTTCCCAGCAACTGTGCCAGCATATTACAGAACCCCTCCTGTCCATCCATTGAACACACATGAAGGAAATACATGGAATTAA

Predicted protein sequences of Glyma07g30440

Limit To All Plant Sequences

>Glyma07g30440.1   sequence type=predicted peptide   gene model=Glyma07g30440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDYQYILGGIMACSFAFLYVVYSFGAKVTDSSSIHVKSNECAKISSENGICSHEDAGSADIIIVGAGVAGSALACTLGKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVDEIDAQQVFGYALYKDGKNTKLSYPLENFGSDISGRSFHNGRFIQRMREKASSLPNVKLEQGTVASLLEEKGTITGVHYKTKSGEEFTAKAPLTIVCDGCFSNLRRSLCNPKVEVPSHFVGLVLENCNLPYANHGHVILGDPSPILFYPISSTEIRCLVDVPGQKLPSLGSGEMARYLKTVVAPQVPPELYDSFIAAVDKGNIRTMPNRSMPASPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRDLLKPLHDLHDASALCRYLESFYTLRKPVASTINTLAGALYKVFCASPDPARKEMRQACFDYLSLGGVFSDGPIALLSGLNPRPLSLVLHFFAVAIYGVGRLLIPFPSPKRMWIGARLISGASGIIFPIIKAEGVRQMFFPATVPAYYRTPPVHPLNTHEGNTWN*

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