SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G14870 | AT | Annotation by Michelle Graham. TAIR10: PLANT CADMIUM RESISTANCE 2 | chr1:5128591-5129458 REVERSE LENGTH=152 | SoyBase | E_val: 4.00E-37 | ISS |
| GO:0006979 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to oxidative stress | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PTHR15907 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR15907:SF11 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF04749 | PFAM | PLAC8 family | JGI | ISS | |
| UniRef100_I1KL83 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KL83_SOYBN | SoyBase | E_val: 4.00E-110 | ISS |
| UniRef100_Q9LQU4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein PLANT CADMIUM RESISTANCE 2 n=1 Tax=Arabidopsis thaliana RepID=PCR2_ARATH | SoyBase | E_val: 2.00E-34 | ISS |
|
Glyma07g30410 not represented in the dataset |
Glyma07g30410 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g185200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g30410.2 sequence type=transcript gene model=Glyma07g30410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TCACTTTAACGAAGCAAATTGGATATTTGTTGGATTATTCTTCGGCTCCACCTTCACCTTTAATAAGGCCTCATCTCCACGCGACAGTGTATTGCGCACACATAGAAATTTCCTTAAAAAAATGTCTGAGAAGGCTGCTCTTGGATCATGGTCGAGTGGCTTGTGCGGCTGCTTCTCTGACTGCAGCAGCTGTTGCCTCACGTTCTGGTGCCCTTGTGCTAGTTTCGGAAGAATAGGAGAGATCGTGGACAAAGGAACAACTTCTTGTTGTCTTCATGGATCACTTTTCTGCCTACTTGGTGGTTTCTCTTATTTAGCGGGTATCTACGCCTGTATGTACCGTACAAAAATAAGGAGGCAATACGGGATTGAGGGACACCAATGTGCAGATTTTTTACTCAGTTGCTTCTGCTCTGCTTGCACCCTTTGCCAAGAGTATCGTGAGCTCCAAGCCCGTGGATTCGACGTCTCTGCTGGTTGGAAAGGGAATGTCCAAATGCGCACGAGTGGCGTGACGGCGGCTCCGGTAGTGAACGGTGGCATGAGCCGTTAG
>Glyma07g30410.1 sequence type=CDS gene model=Glyma07g30410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCTGAGAAGGCTGCTCTTGGATCATGGTCGAGTGGCTTGTGCGGCTGCTTCTCTGACTGCAGCAGCTGTTGCCTCACGTTCTGGTGCCCTTGTGCTAGTTTCGGAAGAATAGGAGAGATCGTGGACAAAGGAACAACTTCTTGTTGTCTTCATGGATCACTTTTCTGCCTACTTGGTGGTTTCTCTTATTTAGCGGGTATCTACGCCTGTATGTACCGTACAAAAATAAGGAGGCAATACGGGATTGAGGGACACCAATGTGCAGATTTTTTACTCAGTTGCTTCTGCTCTGCTTGCACCCTTTGCCAAGAGTATCGTGAGCTCCAAGCCCGTGGATTCGACGTCTCTGCTGAATGCATATATAGGTTGGAAAGGGAATGTCCAAATGCGCACGAGTGGCGTGACGGCGGCTCCGGTAGTGAACGGTGGCATGAGCCGTTAGGGCAGGCGTGTTTGTCCTTTGCTCCGCCAGCGTGA >Glyma07g30410.2 sequence type=CDS gene model=Glyma07g30410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCTGAGAAGGCTGCTCTTGGATCATGGTCGAGTGGCTTGTGCGGCTGCTTCTCTGACTGCAGCAGCTGTTGCCTCACGTTCTGGTGCCCTTGTGCTAGTTTCGGAAGAATAGGAGAGATCGTGGACAAAGGAACAACTTCTTGTTGTCTTCATGGATCACTTTTCTGCCTACTTGGTGGTTTCTCTTATTTAGCGGGTATCTACGCCTGTATGTACCGTACAAAAATAAGGAGGCAATACGGGATTGAGGGACACCAATGTGCAGATTTTTTACTCAGTTGCTTCTGCTCTGCTTGCACCCTTTGCCAAGAGTATCGTGAGCTCCAAGCCCGTGGATTCGACGTCTCTGCTGGTTGGAAAGGGAATGTCCAAATGCGCACGAGTGGCGTGACGGCGGCTCCGGTAGTGAACGGTGGCATGAGCCGTTAG
>Glyma07g30410.1 sequence type=predicted peptide gene model=Glyma07g30410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSEKAALGSWSSGLCGCFSDCSSCCLTFWCPCASFGRIGEIVDKGTTSCCLHGSLFCLLGGFSYLAGIYACMYRTKIRRQYGIEGHQCADFLLSCFCSACTLCQEYRELQARGFDVSAECIYRLERECPNAHEWRDGGSGSERWHEPLGQACLSFAPPA* >Glyma07g30410.2 sequence type=predicted peptide gene model=Glyma07g30410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSEKAALGSWSSGLCGCFSDCSSCCLTFWCPCASFGRIGEIVDKGTTSCCLHGSLFCLLGGFSYLAGIYACMYRTKIRRQYGIEGHQCADFLLSCFCSACTLCQEYRELQARGFDVSAGWKGNVQMRTSGVTAAPVVNGGMSR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
