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Report for Sequence Feature Glyma07g30395

Feature Type:gene_model
Chromosome:Gm07
Start:35401096
stop:35406081
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma07g30395
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G33670AT Annotation by Michelle Graham. TAIR10: NAD(P)-linked oxidoreductase superfamily protein | chr4:16169670-16171446 REVERSE LENGTH=319 SoyBaseE_val: 2.00E-64ISS
GO:0019853GO-bp Annotation by Michelle Graham. GO Biological Process: L-ascorbic acid biosynthetic process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0004033GO-mf Annotation by Michelle Graham. GO Molecular Function: aldo-keto reductase (NADP) activity SoyBaseN/AISS
GO:0010349GO-mf Annotation by Michelle Graham. GO Molecular Function: L-galactose dehydrogenase activity SoyBaseN/AISS
PTHR11732Panther ALDO/KETO REDUCTASE JGI ISS
PTHR11732:SF8Panther OXIDOREDUCTASE-RELATED JGI ISS
PF00248PFAM Aldo/keto reductase family JGI ISS
UniRef100_G7JTZ5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Voltage-gated potassium channel subunit beta-2 n=1 Tax=Medicago truncatula RepID=G7JTZ5_MEDTR SoyBaseE_val: 1.00E-73ISS
UniRef100_UPI0002337EBCUniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002337EBC related cluster n=1 Tax=unknown RepID=UPI0002337EBC SoyBaseE_val: 1.00E-93ISS

Expression Patterns of Glyma07g30395
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g30395 not represented in the dataset
Glyma07g30395 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g30395
ParalogEvidenceComments
Glyma08g06840 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g30395 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.07g185100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma07g30395
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma07g30395
>Glyma07g30395.2   sequence type=transcript   gene model=Glyma07g30395   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCTTGCAAGAGGTGAGTGTGTGAGAGAACAGAGAAATGGAGCTACGTGAGCTTGGAAGAACCGTAGGATTCGGAGGTTCTCCACTGGGCAATGTCTTCGGCGATGTTTCCGAGGAAGAACCCAAAGCTTCCGTTCGCCTCGCTTTTCAATCCGGCATCAACTTCTTCGACACTTCTCCGTACTACGGAGGGACGCTGTCGGAAAAAGTGCTGGAGAAGGCACTGAAGGCTCTGGGAGCTCCGAGGAATTCGTACGTTGTGGCAACGAAGTGCGGACGGTACAAGGAGGGTTTCGATTTCAGCGCGGAGAGAGTGACGAGGAGCATTGAAGAGAGCTTGCAAAGGTTGCAGCTTGACTACGTCGATATTCTCCAATGCCACGACATCGAGTTCGGCTCCTTAGACCAGGTTCTGAATGAGACTGGGGATTTTCAGTTACGTGCTTGATAGGTGGTGCTTTCGTATTGCCATTACTGTGTGAATGACACTAGCTTGGGGGATTTGAAGGCCAAAGGGGTTGGCATTATCAATGCTTCTCCCTTGTCTATGGGCCTCCTGAATGGCATCCTGCCTCGCCGCAACTCAAGAAATTATAAAGTTCACTGTCTGGGTATTGATCATGACTGAGGAAGTCATGGTTCCAAAAGATGATGACTGATTACATTCCTGGAGCTCAGGATGAGTCACCTGATTATACTCCTTCCGGACCTGAGTACCTCCCTTTAGTTGAGACGACTGGATTAGATGATGGTTGTAGCTGACCCTACGACTGAGGAGCTAGATAATGCAGTAGAGGATGCTGAAACAGGTGTGAACCCGTAGATTAGTGTGAACATATCTACCCCTCGTACATGGATAATTTAGTTCATGACTATTGATTACTGACATAGCTAGGAAGTTTGACTTCTCTTGCATTCCTTTTTGAGATGTATGATGACACTAGTTGAATGTATCTATGACTGATGGTGTAGTAGCGTTTGTTATAATGTGATGTTTACTAAAAGCTTTTGATACTATGAAGTTTAATGAAACAAGCATGATTTGAT
Coding sequences of Glyma07g30395
>Glyma07g30395.1   sequence type=CDS   gene model=Glyma07g30395   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGCTACGTGAGCTTGGAAGAACCGTAGGATTCGGAGGTTCTCCACTGGGCAATGTCTTCGGCGATGTTTCCGAGGAAGAACCCAAAGCTTCCGTTCGCCTCGCTTTTCAATCCGGCATCAACTTCTTCGACACTTCTCCGTACTACGGAGGGACGCTGTCGGAAAAAGTGCTGGAGAAGGCACTGAAGGCTCTGGGAGCTCCGAGGAATTCGTACGTTGTGGCAACGAAGTGCGGACGGTACAAGGAGGGTTTCGATTTCAGCGCGGAGAGAGTGACGAGGAGCATTGAAGAGAGCTTGCAAAGGTTGCAGCTTGACTACGTCGATATTCTCCAATGCCACGACATCGAGTTCGGCTCCTTAGACCAGGTTCTGAATGAGACTGGGGATTTTCAGTTACGTGCTTGA

>Glyma07g30395.2   sequence type=CDS   gene model=Glyma07g30395   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGCTACGTGAGCTTGGAAGAACCGTAGGATTCGGAGGTTCTCCACTGGGCAATGTCTTCGGCGATGTTTCCGAGGAAGAACCCAAAGCTTCCGTTCGCCTCGCTTTTCAATCCGGCATCAACTTCTTCGACACTTCTCCGTACTACGGAGGGACGCTGTCGGAAAAAGTGCTGGAGAAGGCACTGAAGGCTCTGGGAGCTCCGAGGAATTCGTACGTTGTGGCAACGAAGTGCGGACGGTACAAGGAGGGTTTCGATTTCAGCGCGGAGAGAGTGACGAGGAGCATTGAAGAGAGCTTGCAAAGGTTGCAGCTTGACTACGTCGATATTCTCCAATGCCACGACATCGAGTTCGGCTCCTTAGACCAGGTTCTGAATGAGACTGGGGATTTTCAGTTACGTGCTTGA
Predicted protein sequences of Glyma07g30395
>Glyma07g30395.1   sequence type=predicted peptide   gene model=Glyma07g30395   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MELRELGRTVGFGGSPLGNVFGDVSEEEPKASVRLAFQSGINFFDTSPYYGGTLSEKVLEKALKALGAPRNSYVVATKCGRYKEGFDFSAERVTRSIEESLQRLQLDYVDILQCHDIEFGSLDQVLNETGDFQLRA*

>Glyma07g30395.2   sequence type=predicted peptide   gene model=Glyma07g30395   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MELRELGRTVGFGGSPLGNVFGDVSEEEPKASVRLAFQSGINFFDTSPYYGGTLSEKVLEKALKALGAPRNSYVVATKCGRYKEGFDFSAERVTRSIEESLQRLQLDYVDILQCHDIEFGSLDQVLNETGDFQLRA*






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