Glyma07g30300 - SoyBase

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Report for Sequence Feature Glyma07g30300

Feature Type:	gene_model
Chromosome:	Gm07
Start:	35337105
stop:	35339041
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g30300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G64430	AT	Annotation by Michelle Graham. TAIR10: Octicosapeptide/Phox/Bem1p family protein \| chr5:25762540-25764081 REVERSE LENGTH=513	SoyBase	E_val: 2.00E-95	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF00564	PFAM	PB1 domain	JGI		ISS
UniRef100_A2Q1B1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Octicosapeptide/Phox/Bem1p n=1 Tax=Medicago truncatula RepID=A2Q1B1_MEDTR	SoyBase	E_val: 1.00E-150	ISS
UniRef100_UPI0002337EB8	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002337EB8 related cluster n=1 Tax=unknown RepID=UPI0002337EB8	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g30300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g30300

Paralog	Evidence	Comments
Glyma08g06940	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g30300 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g184400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g30300

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g30300

Limit To All Plant Sequences

>Glyma07g30300.1   sequence type=CDS   gene model=Glyma07g30300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAACTATCAGTACCCGGCGTCGTACCCTGACTCCGGCGAGTCGTCGCCGCGCTCCCGCGAGATCGACTTCGAGAACCCGCCGCCGTGGGACGAGCAGCAGAACCAAAACTACAAGGCCAAGTTCATGTGCAGCTACGGCGGCAAGATCCAGCCCCGCACCCACGACAACCAGCTCTCCTACGTCGGCGGCGACACCAAGATCCTCGCCGTCGACCGCTCCGTCAAGTTCCCCGCCTTCCTCTCCAAGCTCGCCGCCGTCTGCGACTCCGCCCCGCAGGACCTCACCTTCAAGTACCAGCTCCCCGGTGAGGACCTCGACGCCCTCATCTCCGTCACCAACGACGACGACCTCGAACACATGATGCACGAGTACGACAGACTCTATCGCCCTAACCTAAAACCTGTTAGAATGAGACTCTTCCTCTTCACGCTCTCTAGTTCAAATCCTAATTCCTCTTTCTCCTCCGAACGCGACCATTTCGTCGAGGCTCTTAATTCGGGTCCGATTCCTTCTCAACCCGACCCGATCAAAACCCCGCCCGTTACGCCTTCTAATGTTGACTATCTCTTCGGTCTCGATAAAGCCGTTGCTCCTCCTCCAAATCTTCCTCCGAACTTCGCAGCGGTTAAATTCCACGATCCGGTGCCGGAGCCTGTCGCGCCGCCGGTAGAGTATCAATCGAGAGGCTCCGATCGGGTTGTTGGATCGGATCCGAATGTGAATCCGATTGAAATTCAGAGACAGTTGCAGCAGGAGATGGAGCGATTGCAGATTGCGGAGAATGAATATCGTAGAAGGAGTGAGGATGGATTTGCAGCCGGTTATGCTGCTGCTGCTGCTGCCGGAGGGGATTATTATATGCAGAAGGTGCAGGAGAAGGTTCCGCCGCAGAATGCGGCGGCGTACTGGTCGGAGAAGCAGTTTTCCGGGGAGGGATATCAGACGACGGTGACGACGGCTCCAGGAGGAGGTGACCAGCCGATGTATGTTATGGCGCCGCCGGGGACGTTCTACCACGCGCCAGTGGTGCGGCCTCCGGCGGCGGCGCAGGGGTACTACGCCGTGCAGAGGATGGGTTCCGAGGGCTACCGCGAGCAGCAGGCGGTTTACGGCGGCGTGGCGCCGTCGAAAGCGGCGTTTTCTTCGGCGGGGATGGCTAAGGGGACGGCGTATTCGGAGGGATATGGTGGCGGCGTGGTGAGGCCTGCGGGGGTGCCGGATAATGCGGCGTACGCGCAGGTGGCGTATGATAGCGCGAGTGGGAGGCAGGTTTACTATACTGCGCAGGGAGGGATGGTGCACGCGCCGCCGCCGCCGCAGTACCAAGGGGTTCCGCCTCAGGAATTTAGGCCGGGTGGGGTTTCGGTGGGGCAAGATGGTAAGGTGGTTAACAAGGTTAACCAAGGTTCTGCGTGA

Predicted protein sequences of Glyma07g30300

Limit To All Plant Sequences

>Glyma07g30300.1   sequence type=predicted peptide   gene model=Glyma07g30300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MENYQYPASYPDSGESSPRSREIDFENPPPWDEQQNQNYKAKFMCSYGGKIQPRTHDNQLSYVGGDTKILAVDRSVKFPAFLSKLAAVCDSAPQDLTFKYQLPGEDLDALISVTNDDDLEHMMHEYDRLYRPNLKPVRMRLFLFTLSSSNPNSSFSSERDHFVEALNSGPIPSQPDPIKTPPVTPSNVDYLFGLDKAVAPPPNLPPNFAAVKFHDPVPEPVAPPVEYQSRGSDRVVGSDPNVNPIEIQRQLQQEMERLQIAENEYRRRSEDGFAAGYAAAAAAGGDYYMQKVQEKVPPQNAAAYWSEKQFSGEGYQTTVTTAPGGGDQPMYVMAPPGTFYHAPVVRPPAAAQGYYAVQRMGSEGYREQQAVYGGVAPSKAAFSSAGMAKGTAYSEGYGGGVVRPAGVPDNAAYAQVAYDSASGRQVYYTAQGGMVHAPPPPQYQGVPPQEFRPGGVSVGQDGKVVNKVNQGSA*

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