Glyma07g30270 - SoyBase

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Report for Sequence Feature Glyma07g30270

Feature Type:	gene_model
Chromosome:	Gm07
Start:	35310702
stop:	35314199
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g30270

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G09580	AT	Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G53345.1); Has 53 Blast hits to 53 proteins in 12 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). \| chr5:2972639-2974438 FORWARD LENGTH=393	SoyBase	E_val: 1.00E-132	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_B7F8U1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: cDNA, clone: J065166P19, full insert sequence n=2 Tax=Oryza sativa RepID=B7F8U1_ORYSJ	SoyBase	E_val: 2.00E-91	ISS
UniRef100_UPI0002337EB6	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002337EB6 related cluster n=1 Tax=unknown RepID=UPI0002337EB6	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g30270

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g30270

Paralog	Evidence	Comments
Glyma08g06970	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g30270 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g184100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g30270

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g30270

Limit To All Plant Sequences

>Glyma07g30270.2   sequence type=CDS   gene model=Glyma07g30270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCACTCCGCCGCCACCTAATTATCCACCATACCACACGACGAGCCTCCCTTTCTCTCTGTGTGTAAGGGTTGGGAGAGGGAGCAGAAGCCTGCGTTCAGATGCGGCATTGGAAGCCATAGCCAAAGCTTCAGAAGACAGAGTTTCCAACATCATTCTCTACAACTACCCTTCCTTTTCTGGAGCATTCTCCGCTCTCTTTGCTCACCTCTTCCACACTCGCCACAATCTCCCTTCCCTTATATTGCCCTTCTCTGCAGTTCCCTTTCTCGCTCTCAGGGTTGAAGATTTGTGCTTTGAAGGCCTTGAGACGTGTTACCTACTTGACTTTATTCCTCCAAAGGAATTCCTTTCCGACCTTTCTCGTAAATCAAAATGCAAGATTATTGGGTTTGATCATCGGAAATTGGTACTTAGACATATTCCCCCTGCCAATGATTGCCCCGATAATATTATGATTAATGTAAACCTTGAGAAGAGCAGCTCCAGTGCTGTTTATGAGTACTTTGCCAGCAAATGTGAGGATGTTAATAATTCTTATGGTGCAGCTCCATGTTTGGTGGAATCAAAATACAAAGGCCAGGTGCAGCTGATGCTTAAGTATATTGAGAATGGAGATCTTCGCCGATGGAGCTTGCCTGGCATTAGGGTCTTTAATATTGGACTGAGTGAATGGCGGTCAAGGTTTAACTGCATTTCTAATTCATGCATGTACAAGCAGTTGCTGGAATTAAGTGCTGAAGGTTTGATTGCTAAAGGAAATTCATGTGTTTCAGCTCGCCAGAATGCTGCAAACAAATTGCTGGAAAAGGTTTTCAGGGTTCGACTAGGTAGAGGATTTTATGGAGAGTGCCTGGGAGTTCGGGCAGATGGGAACTCCAACTTAAGTGATGAAATTGGCAAGCTTCTTAGTGTAAAAAGTGCTGCTACTGGTCTTAGTGACAGGCCCATAGGTGCTGTGATATTCATGCAACGGAATAATCTCAAAATGTGCTTGCGTAGCACTGATAGTTCCACTGATACCTCTGAAGTTGCAAAGGGATATGGCGGAGGTGGTTCCCCAAGTTCAAGCTCCTTCATAATAAGGATGGATGAATATAACCAATGGATTTCAGGGAACTCATCATGA

Predicted protein sequences of Glyma07g30270

Limit To All Plant Sequences

>Glyma07g30270.2   sequence type=predicted peptide   gene model=Glyma07g30270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATPPPPNYPPYHTTSLPFSLCVRVGRGSRSLRSDAALEAIAKASEDRVSNIILYNYPSFSGAFSALFAHLFHTRHNLPSLILPFSAVPFLALRVEDLCFEGLETCYLLDFIPPKEFLSDLSRKSKCKIIGFDHRKLVLRHIPPANDCPDNIMINVNLEKSSSSAVYEYFASKCEDVNNSYGAAPCLVESKYKGQVQLMLKYIENGDLRRWSLPGIRVFNIGLSEWRSRFNCISNSCMYKQLLELSAEGLIAKGNSCVSARQNAANKLLEKVFRVRLGRGFYGECLGVRADGNSNLSDEIGKLLSVKSAATGLSDRPIGAVIFMQRNNLKMCLRSTDSSTDTSEVAKGYGGGGSPSSSSFIIRMDEYNQWISGNSS*

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