Glyma07g30231 - SoyBase

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Report for Sequence Feature Glyma07g30231

Feature Type:	gene_model
Chromosome:	Gm07
Start:	35270240
stop:	35273533
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g30231

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G18265	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function, DUF593 \| chr1:6282338-6283180 REVERSE LENGTH=280	SoyBase	E_val: 6.00E-16	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF04576	PFAM	Protein of unknown function, DUF593	JGI		ISS
UniRef100_A8W458	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DUF593-2 protein n=1 Tax=Lotus japonicus RepID=A8W458_LOTJA	SoyBase	E_val: 1.00E-104	ISS
UniRef100_UPI0002337EB3	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002337EB3 related cluster n=1 Tax=unknown RepID=UPI0002337EB3	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g30231

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g30231 not represented in the dataset	Glyma07g30231 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g30231

Paralog	Evidence	Comments
Glyma08g07100	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g30231 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g183700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g30231

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma07g30231

Limit To All Plant Sequences

>Glyma07g30231.2   sequence type=transcript   gene model=Glyma07g30231   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AACCAAACAGAGAATCTCTGAAATGGTCCAAATGACCACACACCACTTCTCTATTTGTCCGCCACCACTTCCTCGATCACCAGTGCCACTCCTCCTCCTCTCTGCGCTCCCAACGCTGCAATAACACGCTCACTCTCTTTCTTCATTCTTCTCTTCCCTTTCGCGCCAACTCTGATCGGTGTTCCTTCCCTCCTTCTGCCTCCTCCTCCCGCCTCAGATGCAGACTCTCCCTCCCTTCTCTTGCATCAGAGGCTCCCCATGGATTTTCCTCCCGCCCTCAATCTCCTTACCGAATTCGGTTGCGGCTTCGTCCTTCTCCGCTCCCTCTCCCGCATCTTCAATCTTCTAGGCCTCTTTCTGATGCTCACATTCTGCTTCAAGGTTATGTGCTTCGGTTGGAACTCCAAGAACGCCCTTCGCTTCCTCTGCGACTCCGGCGGCGTCCCCAGAATCCGCTTCTGCCTCGACAAAGTCGTTTTGGAAAAAGTCTCCAAAGCGAAGACCAAACCTTTGAAAAAACCACGCCACCCCACTTCGAGCTCTTCCTTCCGGAGGCGCCCCGGTGGGTCCGGGGAGAGAGGGAACGCGGTTTCCGATGATGGGTCGGAGGGGAAGGGGGAGAACGAGAGAGAGGGTGGCAATGAGGACGAGGTGTTCGACGTAATGACGCTTAGAAGAATGGTGAGGATGGAGCGGCAGAAGGCCAATGCGGCGTGCGCGGATCTCGAGAAGGAGAGGACGGCGGCCTCCTCGTCCGCGGAGGAGGCGATGGCAATGATCCTGCGGCTGCAGAGCGAGAAGAGCGCTGCGGAGATTCAGGCCACGCAGTTCCGGCGGATGGCGGAGCAGAAGCTGGATTACGATAATGAAGTGATTGAGTCGTTGCAGTGGACGATCACGCAGCACGAGTTTCAGAAGTGTGAGGTGGAGGATCGGATAGAGATGTGTAGGGAGGAACTGAGGCAGTTTATGAGGGATGAGGAAATAGACCGAATTGAAGATGAAGTGAGTAGGAGTTTTATGTATGATAATGAAAATGATAATGATGATCCTGATGGTAATTCAGTAGGTAGCTCTCCCGAAACCGAATCACAGACCTTGTAAGTTTTGAAAGGACTTGAATTGCAAGGATCTGATTCGGATGCTTGCGGGACAACAATATATGAGCCATTTAGCCACAAGGTTTAGGTTTACTTGTGCAATTTCTGTTGAATGAATTACTTTGAAACACTTGTCACTGCAAGGATTATTTGCAGTGGACATAATAAACTTGCCTTAACTTCCAGGTTTACTTGTGTAATTTTGTGATAAACTTTAGTGGAGCAGTTCAAATTGTAAAGGCCTCTCACTTGGGAGTGTTATGTTGTCAGTTACTGACAATAACTTATTGTTAGGATTACATGATCAGGTACTGTATATGTAATGTACCTTCTCTGGGGTTGTGTTTTTCTCTTGGTTTGGAGGACAGGGGGTTAATCTCCTTGCAAAGCATAAATAACCTTTTAATATAATGCATTCCTCATTCCTCACCCTATAATTCTTCGCTCAATTATCAATAAGATAATCATAGATTTCTATTTGTTTTTAAAAAAATTAACAATTACAAAGTATTAGTAGGTAAATGTCTTCATGTGGGTCTACTTGGCTTTCTATGCATTTTACATCTAAATCGGTTAGTATGGAGAAAATGACATGAGAATGATCGGTTTTGAGTTAATAATTAGACATTATAATTCATGAACTTGAAATTGAAATTGAAAGGAAGTGTTTATAGGTGAGAACAAACAAGAGCAGACATATAACTGTATTGATAAACATAAGGTGACTATAGAGTCAAATAAAGGACAATAACATTACATTGATCGAGGTTACGTTCAACTGTAAAATAAATTACATTTACCTGACTTCATAATATGATCAACTTTATTATAAATTTTAACATTGCATAAAGAATTAAAGATAAAATTAATTGTTGTACCAACAAAAGTAACTGTAAAAAGAAAATCTTGTTACTCTAACACTCCAATTCCTACTCATCAGCTCCTTGACAATGAGGAGAGGTTGCATATTGGTCATGAAAGGCCACACTCCACATGAAAGTTTTGACCCGTTGCAGCCCTTTCCACATCCAATACTCTTCCAAAGAGGATCATTCAAAGGATCCGCACAATTCTCAATCAACTCATAGGCGCTGCTAATTGAAAAAGTGTCATTCGGGGTTGGGGCCCAAATAGGCACATCTTGACCTCTGATAAGCTTAGGGGGAGGGTAGGCCACAATCTCAACCATGATTGATGGTGGAAGGTACCCTTGAAACAACACAATGTCCCAAAAACCCTCCTGGTCAACAAGGTCACCCACTTTGGACTGGAGAAGGTCCTTTGGCAAATCATGAATAAAAAAATCATAAACAACATTGCCTTCAAGTCATAAATCTAACCAAAAGTTTACAAACTATCCATTTCCCACTAACCTTGTTCTTGATCAATGCTGGATTGAGGATGTCCCAAGCGAATTAGACCAAATCATTTTGAGTGATGTAATTTCTCTTCTATTCATTAATAAAATATCCAGCGTATTGATCCT

Coding sequences of Glyma07g30231

Limit To All Plant Sequences

>Glyma07g30231.1   sequence type=CDS   gene model=Glyma07g30231   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTTTCCTCCCGCCCTCAATCTCCTTACCGAATTCGGTTGCGGCTTCGTCCTTCTCCGCTCCCTCTCCCGCATCTTCAATCTTCTAGGCCTCTTTCTGATGCTCACATTCTGCTTCAAGGTTATGTGCTTCGGTTGGAACTCCAAGAACGCCCTTCGCTTCCTCTGCGACTCCGGCGGCGTCCCCAGAATCCGCTTCTGCCTCGACAAAGTCGTTTTGGAAAAAGTCTCCAAAGCGAAGACCAAACCTTTGAAAAAACCACGCCACCCCACTTCGAGCTCTTCCTTCCGGAGGCGCCCCGGTGGGTCCGGGGAGAGAGGGAACGCGGTTTCCGATGATGGGTCGGAGGGGAAGGGGGAGAACGAGAGAGAGGGTGGCAATGAGGACGAGGTGTTCGACGTAATGACGCTTAGAAGAATGGTGAGGATGGAGCGGCAGAAGGCCAATGCGGCGTGCGCGGATCTCGAGAAGGAGAGGACGGCGGCCTCCTCGTCCGCGGAGGAGGCGATGGCAATGATCCTGCGGCTGCAGAGCGAGAAGAGCGCTGCGGAGATTCAGGCCACGCAGTTCCGGCGGATGGCGGAGCAGAAGCTGGATTACGATAATGAAGTGATTGAGTCGTTGCAGTGGACGATCACGCAGCACGAGTTTCAGAAGTGTGAGGTGGAGGATCGGATAGAGATGTGTAGGGAGGAACTGAGGCAGTTTATGAGGGATGAGGAAATAGACCGAATTGAAGATGAAGTGAGTAGGAGTTTTATGTATGATAATGAAAATGATAATGATGATCCTGATGGTAATTCAGTAGGTAGCTCTCCCGAAACCGAATCACAGACCTTGACTTGA

>Glyma07g30231.2   sequence type=CDS   gene model=Glyma07g30231   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTTTCCTCCCGCCCTCAATCTCCTTACCGAATTCGGTTGCGGCTTCGTCCTTCTCCGCTCCCTCTCCCGCATCTTCAATCTTCTAGGCCTCTTTCTGATGCTCACATTCTGCTTCAAGGTTATGTGCTTCGGTTGGAACTCCAAGAACGCCCTTCGCTTCCTCTGCGACTCCGGCGGCGTCCCCAGAATCCGCTTCTGCCTCGACAAAGTCGTTTTGGAAAAAGTCTCCAAAGCGAAGACCAAACCTTTGAAAAAACCACGCCACCCCACTTCGAGCTCTTCCTTCCGGAGGCGCCCCGGTGGGTCCGGGGAGAGAGGGAACGCGGTTTCCGATGATGGGTCGGAGGGGAAGGGGGAGAACGAGAGAGAGGGTGGCAATGAGGACGAGGTGTTCGACGTAATGACGCTTAGAAGAATGGTGAGGATGGAGCGGCAGAAGGCCAATGCGGCGTGCGCGGATCTCGAGAAGGAGAGGACGGCGGCCTCCTCGTCCGCGGAGGAGGCGATGGCAATGATCCTGCGGCTGCAGAGCGAGAAGAGCGCTGCGGAGATTCAGGCCACGCAGTTCCGGCGGATGGCGGAGCAGAAGCTGGATTACGATAATGAAGTGATTGAGTCGTTGCAGTGGACGATCACGCAGCACGAGTTTCAGAAGTGTGAGGTGGAGGATCGGATAGAGATGTGTAGGGAGGAACTGAGGCAGTTTATGAGGGATGAGGAAATAGACCGAATTGAAGATGAAGTGAGTAGGAGTTTTATGTATGATAATGAAAATGATAATGATGATCCTGATGGTAATTCAGTAGGTAGCTCTCCCGAAACCGAATCACAGACCTTGTAA

Predicted protein sequences of Glyma07g30231

Limit To All Plant Sequences

>Glyma07g30231.1   sequence type=predicted peptide   gene model=Glyma07g30231   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDFPPALNLLTEFGCGFVLLRSLSRIFNLLGLFLMLTFCFKVMCFGWNSKNALRFLCDSGGVPRIRFCLDKVVLEKVSKAKTKPLKKPRHPTSSSSFRRRPGGSGERGNAVSDDGSEGKGENEREGGNEDEVFDVMTLRRMVRMERQKANAACADLEKERTAASSSAEEAMAMILRLQSEKSAAEIQATQFRRMAEQKLDYDNEVIESLQWTITQHEFQKCEVEDRIEMCREELRQFMRDEEIDRIEDEVSRSFMYDNENDNDDPDGNSVGSSPETESQTLT*

>Glyma07g30231.2   sequence type=predicted peptide   gene model=Glyma07g30231   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDFPPALNLLTEFGCGFVLLRSLSRIFNLLGLFLMLTFCFKVMCFGWNSKNALRFLCDSGGVPRIRFCLDKVVLEKVSKAKTKPLKKPRHPTSSSSFRRRPGGSGERGNAVSDDGSEGKGENEREGGNEDEVFDVMTLRRMVRMERQKANAACADLEKERTAASSSAEEAMAMILRLQSEKSAAEIQATQFRRMAEQKLDYDNEVIESLQWTITQHEFQKCEVEDRIEMCREELRQFMRDEEIDRIEDEVSRSFMYDNENDNDDPDGNSVGSSPETESQTL*

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