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Report for Sequence Feature Glyma07g30180

Feature Type:gene_model
Chromosome:Gm07
Start:35234455
stop:35236200
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma07g30180
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G17050AT Annotation by Michelle Graham. TAIR10: UDP-glucosyl transferase 78D2 | chr5:5607828-5609392 REVERSE LENGTH=460 SoyBaseE_val: 4.00E-134ISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0009718GO-bp Annotation by Michelle Graham. GO Biological Process: anthocyanin-containing compound biosynthetic process SoyBaseN/AISS
GO:0009744GO-bp Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus SoyBaseN/AISS
GO:0009813GO-bp Annotation by Michelle Graham. GO Biological Process: flavonoid biosynthetic process SoyBaseN/AISS
GO:0010224GO-bp Annotation by Michelle Graham. GO Biological Process: response to UV-B SoyBaseN/AISS
GO:0080167GO-bp Annotation by Michelle Graham. GO Biological Process: response to karrikin SoyBaseN/AISS
GO:0008194GO-mf Annotation by Michelle Graham. GO Molecular Function: UDP-glycosyltransferase activity SoyBaseN/AISS
GO:0016757GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups SoyBaseN/AISS
GO:0016758GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring hexosyl groups SoyBaseN/AISS
GO:0035251GO-mf Annotation by Michelle Graham. GO Molecular Function: UDP-glucosyltransferase activity SoyBaseN/AISS
GO:0047213GO-mf Annotation by Michelle Graham. GO Molecular Function: anthocyanidin 3-O-glucosyltransferase activity SoyBaseN/AISS
GO:0080043GO-mf Annotation by Michelle Graham. GO Molecular Function: quercetin 3-O-glucosyltransferase activity SoyBaseN/AISS
KOG1192 KOG UDP-glucuronosyl and UDP-glucosyl transferase JGI ISS
PTHR11926Panther GLUCOSYL/GLUCURONOSYL TRANSFERASES JGI ISS
PTHR11926:SF71Panther UDP-GLUCORONOSYL/UDP-GLUCOSYL TRANSFERASE FAMILY P JGI ISS
PF00201PFAM UDP-glucoronosyl and UDP-glucosyl transferase JGI ISS
UniRef100_D3Y5N8UniRef Annotation by Michelle Graham. Most informative UniRef hit: UGT78K1 n=1 Tax=Glycine max RepID=D3Y5N8_SOYBN SoyBaseE_val: 0ISS
UniRef100_I1KL63UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KL63_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma07g30180
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g30180
ParalogEvidenceComments
Glyma08g07130 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g30180 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.07g183200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma07g30180
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma07g30180
>Glyma07g30180.1   sequence type=CDS   gene model=Glyma07g30180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCATCAAAACAAACACGTAGCAGTCTTTGCTTTCCCCTTTGGCAGCCACCTTATGCCTCTCTTAAACCTTGTCCTCAAACTAGCTCATTCCCTTCCAAACTGTTCATTCTCTTTCATTGGCACACACAAATCCAATGCAATCCTTTTCCCAAAACCCCACATCCCAAATAACATCAAGGCCTATAGCATAAGTGATGGAATCCCAGAGGGTCACGTCCTAGGCAAAAACCCAACTGAAAAATTGAATCTTTTTCTCCAAACTGGTCCTGAGAACCTTCACAAAGGTATAGAATTAGCGGAAGCAGAGACAAAGAAGAGAGTCACATGCATCATTGCAGATGCTTTAGTAACCTCTTCTCTCCTAGTGGCTCAGACCCTCAATGTTCCTTGGATTGCACTTTGGCTTCCCAATTCATGCTCACTCTCTCTCTATTTCTACACTGACTTGATTCGCCAGCACTGTGCAAGCCGTGCTGGGAACAAAACCTTGGATTTCATTCCAGGGCTGTCGAAGTTGCGTGTTGAAGACATGCCACAGGATCTGCTTGATGTTGGAGAAAAAGAAACAGTTTTTTCAAGGGAACTAAATTCGCTAGGTAAGGTGCTACCTCAAGCTAAGGTAGTAGTTATGAATTTCTTTGAGGAATTGGAACCACCTTTGTTTGTTCAAGACATGAGAAACAAGTTGCAGTCTTTGCTTTATGTTGTTCCACTTCCTTCCACGTTGTTGCCACCATCTGACACAGATTCAAGTGGTTGCTTGTCATGGTTGGGTATGAAGAACTCTAAATCGGTGGCTTATGTTTGCTTTGGGACTGTGGTGGCACCACCTCCACATGAGCTTGTGGCAGTGGCAGAGGCATTGGAAGAAAGTGGCTTTCCTTTTCTGTGGTCTCTGAAGGAAGGTCTAATGAGTCTTTTGCCAAATGGGTTTGTTGAGAGGACCAAGAAGCGTGGGAAAATAGTGTCTTGGGCTCCACAAACCCATGTTTTGGCTCATGATTCTGTAGGAGTTTTTGTGACTCACTGTGGAGCTAACTCTGTGATTGAGAGTGTTTCCAGTGGTGTTCCTATGATCTGCAGGCCATTCTTTGGAGATCAAGGGGTGGCTGCAAGAGTGATAGAAGATGTTTGGGAGATTGGGATGATGATAGAAGGTAAGATGTTCACCAAAAATGGATTGGTGAAGAGCTTGAATTTGATTCTGGTGCATGAAGAAGGGAAGAAGATTAGAGACAATGCTCTTAGGGTGAAGAAGACTGTGGAAGATGCAGGTAGGCCTGAAGGGCAAGCAACACAAGATTTCAACACTCTGGTGGAAGTAATTTCTAGATCTTAA
Predicted protein sequences of Glyma07g30180
>Glyma07g30180.1   sequence type=predicted peptide   gene model=Glyma07g30180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDHQNKHVAVFAFPFGSHLMPLLNLVLKLAHSLPNCSFSFIGTHKSNAILFPKPHIPNNIKAYSISDGIPEGHVLGKNPTEKLNLFLQTGPENLHKGIELAEAETKKRVTCIIADALVTSSLLVAQTLNVPWIALWLPNSCSLSLYFYTDLIRQHCASRAGNKTLDFIPGLSKLRVEDMPQDLLDVGEKETVFSRELNSLGKVLPQAKVVVMNFFEELEPPLFVQDMRNKLQSLLYVVPLPSTLLPPSDTDSSGCLSWLGMKNSKSVAYVCFGTVVAPPPHELVAVAEALEESGFPFLWSLKEGLMSLLPNGFVERTKKRGKIVSWAPQTHVLAHDSVGVFVTHCGANSVIESVSSGVPMICRPFFGDQGVAARVIEDVWEIGMMIEGKMFTKNGLVKSLNLILVHEEGKKIRDNALRVKKTVEDAGRPEGQATQDFNTLVEVISRS*






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