Report for Sequence Feature Glyma07g30170
Feature Type: gene_model
Chromosome: Gm07
Start: 35223141
stop: 35226181
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma07g30170
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G23970 AT
Annotation by Michelle Graham. TAIR10: Class I glutamine amidotransferase-like superfamily protein | chr2:10199698-10201081 FORWARD LENGTH=251
SoyBase E_val: 5.00E-85 ISS
GO:0006952 GO-bp
Annotation by Michelle Graham. GO Biological Process: defense response
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
KOG3179
KOG
Predicted glutamine synthetase
JGI ISS
PTHR11922 Panther
GMP SYNTHASE-RELATED
JGI ISS
PTHR11922:SF11 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF00117 PFAM
Glutamine amidotransferase class-I
JGI ISS
UniRef100_G7K286 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: GMP synthase n=1 Tax=Medicago truncatula RepID=G7K286_MEDTR
SoyBase E_val: 8.00E-130 ISS
UniRef100_I1KL62 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KL62_SOYBN
SoyBase E_val: 7.00E-179 ISS
Expression Patterns of Glyma07g30170
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma07g30170
Paralog Evidence Comments
Glyma08g07140 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma07g30170 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.07g183100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma07g30170
Coding sequences of Glyma07g30170
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma07g30170.1 sequence type=CDS gene model=Glyma07g30170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAGATCAAGAAGAGGTTTGGGGTGTTGATGTGTGCAGAGGATTCGGAGTACGTGAAAAAAGTGTACGGAGGGTATTCTGGGGTTTTCGTGAGAATGCTGGCGGAGGAGGGAGAGACATGGGACGTGTACAAGGTGGCGCGTGGGGAGTTTCCTGACGAAGATGATTTGGGTCTCTATGATGGGTTTGTGATCACTGGCAGCTGCAGTGACGCACATGGCAACGACACATGGGTCAGTGATCTTCTCAACTTGCTTCGCAAACTCGATTCCATCAACACCAAGATCCTCGGCATTTGCTTTGGCCACCAGATACTTGGGCGTGCATTGGGAGGGAAGGTGACTCGTTCTACTACTGGATGGGATCTTGGTGTCAGAACCATAACATTGTCACCATCTTTGCGATTTGCTTTGTCTTCTCTTGATCTTCCATCAAGACTTTCCATTATCGAATGCCACAGGGATGAGATCCGAGAGCTACCAGCCAAGGCAGAGGTTATTGCTTGGTCGGATAAGACTGGAATTGAAATGTTCAGGTATGGAGATCACATTATGGGAATCCAAGGTCACCCTGAGTACTCCAAAGACATTCTTTTGCACCTTATTGACCGTCTCATTCAACGCAATTACATCATAGATGCTTTTGGTAAACAAGCAAGGGAGAGGGCTGCGTTGTGGGAGCCAGATAGGGAGGCTTGGAAGAAACTCTGTGTCACTTTTTTGAAGGGTAGATTGTGA
Predicted protein sequences of Glyma07g30170
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma07g30170.1 sequence type=predicted peptide gene model=Glyma07g30170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEIKKRFGVLMCAEDSEYVKKVYGGYSGVFVRMLAEEGETWDVYKVARGEFPDEDDLGLYDGFVITGSCSDAHGNDTWVSDLLNLLRKLDSINTKILGICFGHQILGRALGGKVTRSTTGWDLGVRTITLSPSLRFALSSLDLPSRLSIIECHRDEIRELPAKAEVIAWSDKTGIEMFRYGDHIMGIQGHPEYSKDILLHLIDRLIQRNYIIDAFGKQARERAALWEPDREAWKKLCVTFLKGRL*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
