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Report for Sequence Feature Glyma07g30160

Feature Type:gene_model
Chromosome:Gm07
Start:35207221
stop:35210532
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma07g30160
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G09570AT Annotation by Michelle Graham. TAIR10: Cox19-like CHCH family protein | chr5:2970733-2971970 FORWARD LENGTH=139 SoyBaseE_val: 1.00E-51ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0016036GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation SoyBaseN/AISS
GO:0019375GO-bp Annotation by Michelle Graham. GO Biological Process: galactolipid biosynthetic process SoyBaseN/AISS
GO:0045892GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
KOG4090 KOG Uncharacterized conserved protein JGI ISS
PTHR13523Panther COILED-COIL-HELIX-COILED-COIL-HELIX DOMAIN CONTAINING 2/NUR77 JGI ISS
PTHR13523:SF2Panther gb def: agcp9078 [anopheles gambiae str. pest] JGI ISS
PF06747PFAM CHCH domain JGI ISS
UniRef100_B6TKB9UniRef Annotation by Michelle Graham. Most informative UniRef hit: p8MTCP1 n=1 Tax=Zea mays RepID=B6TKB9_MAIZE SoyBaseE_val: 1.00E-40ISS
UniRef100_C6SWP3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SWP3_SOYBN SoyBaseE_val: 2.00E-96ISS

Expression Patterns of Glyma07g30160
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g30160
ParalogEvidenceComments
Glyma08g07150 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g30160 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.07g183000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma07g30160
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma07g30160
>Glyma07g30160.1   sequence type=CDS   gene model=Glyma07g30160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTCGCCGTAGCTCCGGTGGAAGATCTGCCCGTCCTGCTCCTCGTGCAGCACCTCGTCCTGCTCCAGTTCACCATGCTCCTCCTCCAGCCCCTGCTCAGAGCGGTGGCGGATCTATGCTTGGTGGCATTGGTTCAACCATAGCTCAAGGTATGGCTTTTGGCACTGGAAGTGCAGTGGCACACAGGGCTGTGGATGCTGTCATGGGTCCTCGTACCATTCAACATGAAGCAGTAGTCACGGAGGCTGCTGCTGCTGCCCCTGCACCCACTGCAAATACTTTTGGTGGCGATGCATGCAATGTTCATACAAAGGCATTCCAGGATTGCCTGAACAGCTATGGCAGTGACCTTAGCAAGTGCCAGTTTTACATGGATATGCTTGCAGAATGCAGGAAGAACTCTGGAGCCTCGTTGAGTGTGTAA
Predicted protein sequences of Glyma07g30160
>Glyma07g30160.1   sequence type=predicted peptide   gene model=Glyma07g30160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPRRSSGGRSARPAPRAAPRPAPVHHAPPPAPAQSGGGSMLGGIGSTIAQGMAFGTGSAVAHRAVDAVMGPRTIQHEAVVTEAAAAAPAPTANTFGGDACNVHTKAFQDCLNSYGSDLSKCQFYMDMLAECRKNSGASLSV*






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