Glyma07g30120 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma07g30120

Feature Type:	gene_model
Chromosome:	Gm07
Start:	35177028
stop:	35184297
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g30120

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G51580	AT	Annotation by Michelle Graham. TAIR10: RNA-binding KH domain-containing protein \| chr1:19125612-19128102 FORWARD LENGTH=621	SoyBase	E_val: 6.00E-97	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
KOG2190	KOG	PolyC-binding proteins alphaCP-1 and related KH domain proteins	JGI		ISS
PTHR10288	Panther	RNA-BINDING PROTEIN RELATED	JGI		ISS
PTHR10288:SF53	Panther	KH DOMAIN-CONTAINING PROTEIN	JGI		ISS
PF00013	PFAM	KH domain	JGI		ISS
UniRef100_G7JV44	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Poly(RC)-binding protein n=1 Tax=Medicago truncatula RepID=G7JV44_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KL57	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KL57_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g30120

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g30120

Paralog	Evidence	Comments
Glyma08g07190	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g30120 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g182400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g30120

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g30120

Limit To All Plant Sequences

>Glyma07g30120.1   sequence type=CDS   gene model=Glyma07g30120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGAACCAAACTCCAACCCTAACCACTCTAACGGTCACGTGAACCGTTCCAGACCCTACACGACTCACGTGACCTTCCGTCTCCTCTGTCACGCGTCGCGCGTGGGCGCCATCATCGGCAAGTCCGGCGTGCTCATCAAGACGCTCCAGGAGGCCACCGGCGCCAAGATCCGAATCGAGGACGCGCCGCCGGACTCCCCCGACCGCGTCATCCTCGTCAGCGCCCCCGCCGCCGCCTCCGACGGTGAGGTCTCCACGGCGCAGGTGGCGCTGCTCAAGGTCTTCGACCGGGTTCTCGACGTCGCCGCCGAGACCGCTGGCACTGAAGTTGGCGACCGAGTGGTCTCTTGCCGGCTGCTGGCCGACACTTCGCAGGTCGGCGCCGTCATTGGCAAGGCCGGGAAGGTCGTGGAGAAGATCAGGATGGACACCGGATGTAAGATTAGGGTTTTGAACGAAGGTTTGCCGGCGTGCACTGCTCCCTCCGATGAAATCGTTGAGGTAGAAGGCCAGCTGACATCTGTAAAGAAGGCACTTGTTGCTGTCTCCGGTTGTCTTCAAGATTGTCCTCCTCCTGATAGAACAAAGATGACGGGAAGCAGACATTATGAAGTGGTTCGGTCTGAGACATGTTCAGTTCCACTTGAGTCTTTAACTAATTTGCATATAGATCGTCGTCTGCAAAGGAGCTCTACATTATCCACTTTATCCAATAGGTCTAATGGCAATGCCTCTGGAGCTCCTAAATTATCAGCTGAAGTTAATAGAGTCTCAGCCCTGGATCCAAAAGCACTTCAGCAGGAAGTTACCTTTAGAATTATTTGTTCCAATGATAGAGTTGGAGCCGTAATTGGAAAGGGGGGCAGTATTGTAAGAGCTCTTCAGAATGAATCAGGGGCTATTATAAGTTTTGGTCCTTCATTAGTTGAGTGCGAGGATCGACTAGTTACTATTACTGCTTCAGAGAACCCTGAATCAAGATATTCTCCTGCACAGAAGGCTGTTGTTCTTGTTTTCTCCAAGTCTGTTGAGGCTGGTGTTGAGAAGGGGCTAGACATGGGATCAAAAAAGGAGTCATATGTTACTGCACAACTTGTAGTCCCATCAAACCAAGTGGGTTGTTTATTAGGGAAAGGAGGAGCAATAGTCTCAGAAATGCGGAAAGCCACAGGGGCTAACATAAGAGTAATTGGGAATGATAAGGTTCCAAAGTGTGTATCGGATAATGATCAATTGGTACAGATATCAGGAGAGTTTTCAAATGTTCAAGCTGCAATATATAATGCAACCGGTAGACTGCGAGATAATCTTTTTGTTAGTACACAAAACAGTGGCGGAGCGAGGAGCCTTTCCTCTGTTCTATCTGGAGGCAAACCAACTGTTGCTGTTTCTCTTAGTCTCAATAGACATTCTTTGCCAGGATTACAGGCACCACAGACAGTGGCTGGGATCAATTCCAGAGTCACCAATGGTGTTAGTCGGGGATTGACTTCTCAAAAAGGTGGCTTAGAACTTGTCAGTGGGAGTAAAACTGCCATTGTTACTAATACAACTGTGCAAATTGCGGTTCCTGATGATGTTATTGGCTCTGTATATGGGGAAAATGGCAGCAATCTGGCTCGCCTGAGACAGATATCAGGGGCAAAGGTTATTGTCCACGAACCTCGTCCTGGAACAAGTGACAGGACTATTATCATATCCGGTACACCCGATGAAACTCGAGCAGCACAGAGCCTTCTCCAAGCATTTATTCTCGCTGGATCATCGTGA

Predicted protein sequences of Glyma07g30120

Limit To All Plant Sequences

>Glyma07g30120.1   sequence type=predicted peptide   gene model=Glyma07g30120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEPNSNPNHSNGHVNRSRPYTTHVTFRLLCHASRVGAIIGKSGVLIKTLQEATGAKIRIEDAPPDSPDRVILVSAPAAASDGEVSTAQVALLKVFDRVLDVAAETAGTEVGDRVVSCRLLADTSQVGAVIGKAGKVVEKIRMDTGCKIRVLNEGLPACTAPSDEIVEVEGQLTSVKKALVAVSGCLQDCPPPDRTKMTGSRHYEVVRSETCSVPLESLTNLHIDRRLQRSSTLSTLSNRSNGNASGAPKLSAEVNRVSALDPKALQQEVTFRIICSNDRVGAVIGKGGSIVRALQNESGAIISFGPSLVECEDRLVTITASENPESRYSPAQKAVVLVFSKSVEAGVEKGLDMGSKKESYVTAQLVVPSNQVGCLLGKGGAIVSEMRKATGANIRVIGNDKVPKCVSDNDQLVQISGEFSNVQAAIYNATGRLRDNLFVSTQNSGGARSLSSVLSGGKPTVAVSLSLNRHSLPGLQAPQTVAGINSRVTNGVSRGLTSQKGGLELVSGSKTAIVTNTTVQIAVPDDVIGSVYGENGSNLARLRQISGAKVIVHEPRPGTSDRTIIISGTPDETRAAQSLLQAFILAGSS*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain