Glyma07g30060 - SoyBase

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Report for Sequence Feature Glyma07g30060

Feature Type:	gene_model
Chromosome:	Gm07
Start:	35132265
stop:	35136178
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g30060

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G65420	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF565) \| chr1:24297669-24298374 REVERSE LENGTH=197	SoyBase	E_val: 1.00E-67	ISS
GO:0010196	GO-bp	Annotation by Michelle Graham. GO Biological Process: nonphotochemical quenching	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF04483	PFAM	Protein of unknown function (DUF565)	JGI		ISS
UniRef100_G7JCQ1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ycf20-like protein n=1 Tax=Medicago truncatula RepID=G7JCQ1_MEDTR	SoyBase	E_val: 3.00E-76	ISS
UniRef100_I1KL49	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KL49_SOYBN	SoyBase	E_val: 3.00E-148	ISS

Expression Patterns of Glyma07g30060

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g30060 not represented in the dataset	Glyma07g30060 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g30060

Paralog	Evidence	Comments
Glyma08g07240	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g30060 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g181800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g30060

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma07g30060

Limit To All Plant Sequences

>Glyma07g30060.4   sequence type=transcript   gene model=Glyma07g30060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CACTCTATTTCTTCTTTTTCTTCTCATACTCATTGCTATGGCTACCAACCACAACACAATCTCTGATCTTCAACCCACTACAATTTTTGGCCATTTCATTTGACCCATTTTTTCGTTTTGGGTATTGATGTTAGTGTTGTGATGTACTTTTAAATTCAATGGAGGTTGGATATACATATACCCTTACGAGCCTTTTAGGATTAGGAGCTTGAAAGCACTTTAACTTCTTAATACATGGCTTGTCAAATGGGAACTATGACTCTGAACTGGAGATTATCAATTACAGAGAATGAAAGCTCTGAAAAGTCATGTGTCAACCTTGCAACTTCCAGAATCCACAGCTGTTGCTGTGAGCCAAATTTTAACGGGCTAACTCTAAAAGCTTGCATGAAATCTTCACCTTTTGCTCAGAGCTGTTTCCTGGGAAGAAGAGCTGGGTGGAAAATAGCTTTTGCATTGAACACAGGTGGAGTGTCTGGAAATGGTGACCAACAAAGCTTCAACGAAGCCAGTTCCAATCTCGGTGGTACTCGATTGGGTAGGATATTGACTGCAGGTGGCAGACAACTTCTAGAAAAGCTGAACTCAGCTAGAAAGAACATCCCTTTGAAAGTATTCCTGCTACTTTTGGGTTTCTACACGGCAAATGCACTAGCTACAATCCTTGGGCAAACCGGTGATTGGGATGTTCTGGTTGCTGGTGTTGTGGTGGCTGCAATTGAGGGGATTGGCATGCTAATATATAGAAAGCTACCTACCGCGAGGACTGGGAGGTTGCAGTCTTTTCTAGTGCTGGTGAACTACTGGAAAGCTGGCATATGTTTAGGTCTCTTTGTAGATGCTTTTAAGTTGGGAAGCTAAGAACCCGCAAAATCTTGTCCTTGTTTTGTCTTTTCAATTTTTTGTTGTATGTCATAAAACTCTGTTAAGCCATAATTTTGACCGTAGTCTTCTTCTATTGCTACCTTATAGTTCTATACTAGTGGTGTACATGTAATTGTAGTATGTGAATAGTATATATGACGATTGCTTAATGACTTTATGGCTCTGTGCACACTGCACAGTGCACCATTTTGCATGTGCTTGGTGAAGGAGAAACTGTTACATTAATTTGTTTGTACATTTGTACTGGTGGTCTGAGTTTCACTGTTTAAGAGGGAAAGAATTTATTGGGAGTCACTGGAGCTAATAAAATTATACTTGTGCTGGGTTGTAAATACAAAGTAGTATAGGTAGTGTCTCTCTATTTGTTCTTTCTTAATATATGTCAGCAGATGCTATTGATTCATTGGAG

>Glyma07g30060.5   sequence type=transcript   gene model=Glyma07g30060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTGATCTTCAACCCACTACAATTTTTGGCCATTTCATTTGACCCATTTTTTCGTTTTGGGTATTGATGTTAGTGTTGTGATGTACTTTTAAATTCAATGGAGATTAGGAGCTTGAAAGCACTTTAACTTCTTAATACATGGCTTGTCAAATGGGAACTATGACTCTGAACTGGAGATTATCAATTACAGAGAATGAAAGCTCTGAAAAGTCATGTGTCAACCTTGCAACTTCCAGAATCCACAGCTGTTGCTGTGAGCCAAATTTTAACGGGCTAACTCTAAAAGCTTGCATGAAATCTTCACCTTTTGCTCAGAGCTGTTTCCTGGGAAGAAGAGCTGGGTGGAAAATAGCTTTTGCATTGAACACAGGTGGAGTGTCTGGAAATGGTGACCAACAAAGCTTCAACGAAGCCAGTTCCAATCTCGGTGGTACTCGATTGGGTAGGATATTGACTGCAGGTGGCAGACAACTTCTAGAAAAGCTGAACTCAGCTAGAAAGAACATCCCTTTGAAAGTATTCCTGCTACTTTTGGGTTTCTACACGGCAAATGCACTAGCTACAATCCTTGGGCAAACCGGTGATTGGGATGTTCTGGTTGCTGGTGTTGTGGTGGCTGCAATTGAGGGGATTGGCATGCTAATATATAGAAAGCTACCTACCGCGAGGACTGGGAGGTTGCAGTCTTTTCTAGTGCTGGTGAACTACTGGAAAGCTGGCATATGTTTAGGTCTCTTTGTAGATGCTTTTAAGTTGGGAAGCTAAGAACCCGCAAAATCTTGTCCTTGTTTTGTCTTTTCAATTTTTTGTTGTATGTCATAAAACTCTGTTAAGCCATAATTTTGACCGTAGTCTTCTTCTATTGCTACCTTATAGTTCTATACTAGTGGTGTACATGTAATTGTAGTATGTGAATAGTATATATGACGATTGCTTAATGACTTTATGGCTCTGTGCACACTGCACAGTGCACCATTTTGCATGTGCTTGGTGAAGGAGAAACTGTTACATTAATTTGTTTGTACATTTGTACTGGTGGTCTGAGTTTCACTGTTTAAGAGGGAAAGAATTTATTGGGAGTCACTGGAGCTAATAAAATTATACTTGTGCTGGGTTGT

Coding sequences of Glyma07g30060

Limit To All Plant Sequences

>Glyma07g30060.3   sequence type=CDS   gene model=Glyma07g30060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTGTCAAATGGGAACTATGACTCTGAACTGGAGATTATCAATTACAGAGAATGAAAGCTCTGAAAAGTCATGTGTCAACCTTGCAACTTCCAGAATCCACAGCTGTTGCTGTGAGCCAAATTTTAACGGGCTAACTCTAAAAGCTTGCATGAAATCTTCACCTTTTGCTCAGAGCTGTTTCCTGGGAAGAAGAGCTGGGTGGAAAATAGCTTTTGCATTGAACACAGGTGGAGTGTCTGGAAATGGTGACCAACAAAGCTTCAACGAAGCCAGTTCCAATCTCGGTGGTACTCGATTGGGTAGGATATTGACTGCAGGTGGCAGACAACTTCTAGAAAAGCTGAACTCAGCTAGAAAGAACATCCCTTTGAAAGTATTCCTGCTACTTTTGGGTTTCTACACGGCAAATGCACTAGCTACAATCCTTGGGCAAACCGGTGATTGGGATGTTCTGGTTGCTGGTGTTGTGGTGGCTGCAATTGAGGGGATTGGCATGCTAATATATAGAAAGCTACCTACCGCGAGGACTGGGAGGTTGCAGTCTTTTCTAGTGCTGGTGAACTACTGGAAAGCTGGCATATGTTTAGGTCTCTTTGTAGATGCTTTTAAGTTGGGAAGCTAA

>Glyma07g30060.4   sequence type=CDS   gene model=Glyma07g30060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTGTCAAATGGGAACTATGACTCTGAACTGGAGATTATCAATTACAGAGAATGAAAGCTCTGAAAAGTCATGTGTCAACCTTGCAACTTCCAGAATCCACAGCTGTTGCTGTGAGCCAAATTTTAACGGGCTAACTCTAAAAGCTTGCATGAAATCTTCACCTTTTGCTCAGAGCTGTTTCCTGGGAAGAAGAGCTGGGTGGAAAATAGCTTTTGCATTGAACACAGGTGGAGTGTCTGGAAATGGTGACCAACAAAGCTTCAACGAAGCCAGTTCCAATCTCGGTGGTACTCGATTGGGTAGGATATTGACTGCAGGTGGCAGACAACTTCTAGAAAAGCTGAACTCAGCTAGAAAGAACATCCCTTTGAAAGTATTCCTGCTACTTTTGGGTTTCTACACGGCAAATGCACTAGCTACAATCCTTGGGCAAACCGGTGATTGGGATGTTCTGGTTGCTGGTGTTGTGGTGGCTGCAATTGAGGGGATTGGCATGCTAATATATAGAAAGCTACCTACCGCGAGGACTGGGAGGTTGCAGTCTTTTCTAGTGCTGGTGAACTACTGGAAAGCTGGCATATGTTTAGGTCTCTTTGTAGATGCTTTTAAGTTGGGAAGCTAA

>Glyma07g30060.5   sequence type=CDS   gene model=Glyma07g30060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTGTCAAATGGGAACTATGACTCTGAACTGGAGATTATCAATTACAGAGAATGAAAGCTCTGAAAAGTCATGTGTCAACCTTGCAACTTCCAGAATCCACAGCTGTTGCTGTGAGCCAAATTTTAACGGGCTAACTCTAAAAGCTTGCATGAAATCTTCACCTTTTGCTCAGAGCTGTTTCCTGGGAAGAAGAGCTGGGTGGAAAATAGCTTTTGCATTGAACACAGGTGGAGTGTCTGGAAATGGTGACCAACAAAGCTTCAACGAAGCCAGTTCCAATCTCGGTGGTACTCGATTGGGTAGGATATTGACTGCAGGTGGCAGACAACTTCTAGAAAAGCTGAACTCAGCTAGAAAGAACATCCCTTTGAAAGTATTCCTGCTACTTTTGGGTTTCTACACGGCAAATGCACTAGCTACAATCCTTGGGCAAACCGGTGATTGGGATGTTCTGGTTGCTGGTGTTGTGGTGGCTGCAATTGAGGGGATTGGCATGCTAATATATAGAAAGCTACCTACCGCGAGGACTGGGAGGTTGCAGTCTTTTCTAGTGCTGGTGAACTACTGGAAAGCTGGCATATGTTTAGGTCTCTTTGTAGATGCTTTTAAGTTGGGAAGCTAA

Predicted protein sequences of Glyma07g30060

Limit To All Plant Sequences

>Glyma07g30060.3   sequence type=predicted peptide   gene model=Glyma07g30060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MACQMGTMTLNWRLSITENESSEKSCVNLATSRIHSCCCEPNFNGLTLKACMKSSPFAQSCFLGRRAGWKIAFALNTGGVSGNGDQQSFNEASSNLGGTRLGRILTAGGRQLLEKLNSARKNIPLKVFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEGIGMLIYRKLPTARTGRLQSFLVLVNYWKAGICLGLFVDAFKLGS*

>Glyma07g30060.4   sequence type=predicted peptide   gene model=Glyma07g30060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MACQMGTMTLNWRLSITENESSEKSCVNLATSRIHSCCCEPNFNGLTLKACMKSSPFAQSCFLGRRAGWKIAFALNTGGVSGNGDQQSFNEASSNLGGTRLGRILTAGGRQLLEKLNSARKNIPLKVFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEGIGMLIYRKLPTARTGRLQSFLVLVNYWKAGICLGLFVDAFKLGS*

>Glyma07g30060.5   sequence type=predicted peptide   gene model=Glyma07g30060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MACQMGTMTLNWRLSITENESSEKSCVNLATSRIHSCCCEPNFNGLTLKACMKSSPFAQSCFLGRRAGWKIAFALNTGGVSGNGDQQSFNEASSNLGGTRLGRILTAGGRQLLEKLNSARKNIPLKVFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEGIGMLIYRKLPTARTGRLQSFLVLVNYWKAGICLGLFVDAFKLGS*

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