Glyma07g29960 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma07g29960

Feature Type:	gene_model
Chromosome:	Gm07
Start:	35042981
stop:	35046952
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g29960

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G64330	AT	Annotation by Michelle Graham. TAIR10: Phototropic-responsive NPH3 family protein \| chr5:25727568-25730225 FORWARD LENGTH=746	SoyBase	E_val: 0	ISS
GO:0000271	GO-bp	Annotation by Michelle Graham. GO Biological Process: polysaccharide biosynthetic process	SoyBase	N/A	ISS
GO:0009416	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to light stimulus	SoyBase	N/A	ISS
GO:0009637	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to blue light	SoyBase	N/A	ISS
GO:0009638	GO-bp	Annotation by Michelle Graham. GO Biological Process: phototropism	SoyBase	N/A	ISS
GO:0009664	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall organization	SoyBase	N/A	ISS
GO:0009785	GO-bp	Annotation by Michelle Graham. GO Biological Process: blue light signaling pathway	SoyBase	N/A	ISS
GO:0009825	GO-bp	Annotation by Michelle Graham. GO Biological Process: multidimensional cell growth	SoyBase	N/A	ISS
GO:0009832	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall biogenesis	SoyBase	N/A	ISS
GO:0009932	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell tip growth	SoyBase	N/A	ISS
GO:0010155	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of proton transport	SoyBase	N/A	ISS
GO:0010817	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of hormone levels	SoyBase	N/A	ISS
GO:0016567	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein ubiquitination	SoyBase	N/A	ISS
GO:0043481	GO-bp	Annotation by Michelle Graham. GO Biological Process: anthocyanin accumulation in tissues in response to UV light	SoyBase	N/A	ISS
GO:0046777	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation	SoyBase	N/A	ISS
GO:0048767	GO-bp	Annotation by Michelle Graham. GO Biological Process: root hair elongation	SoyBase	N/A	ISS
GO:0071555	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall organization	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004871	GO-mf	Annotation by Michelle Graham. GO Molecular Function: signal transducer activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
PTHR13690	Panther	KELCH-RELATED	JGI		ISS
PTHR13690:SF174	Panther	KELCH-RELATED	JGI		ISS
PF03000	PFAM	NPH3 family	JGI		ISS
UniRef100_G7JV64	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Root phototropism protein n=1 Tax=Medicago truncatula RepID=G7JV64_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002337EAA	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002337EAA related cluster n=1 Tax=unknown RepID=UPI0002337EAA	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g29960

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g29960

Paralog	Evidence	Comments
Glyma08g07440	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g29960 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g180900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g29960

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g29960

Limit To All Plant Sequences

>Glyma07g29960.2   sequence type=CDS   gene model=Glyma07g29960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGTTCTGTGCAGAAAGCGACAAGTTTGAGATAAGTCCAAGCACCCCCATGTGGGGTTCCTCCTCCCTTTTCATCAGCTTTCTTTCTCTCCTCATTCATTTTGCTCTTTGGTTTACCCCCTCTTTGTTCTTTTTCTCTCACTTAGAAGCCACTTTCCTTGGAAAAACAAGCTTGCCTTGTAGTTGTGTTGTGAGTTCTGGTTTGGTTTTAAGCATGTGGGAATCAGAGAGTGAGTCTGGTGCAGGAAGGGAATATGGGAGTGGACTCCTCACTTCAACCAAGCACAGTGTCAAGACTGAGGGATTTCAGCAAAGAGGCAACTCTTGGTATGTTTCAGCTGATATTCCAAGTGATCTTCTTGTTCAAATTGGAGATGCAAATTTCCATTTGCACAAGTACCCTTTGCTATCTAGAAGTGGAAAGCTGAACAGAATTATATACGATTCGCGCGACCCTGACTTGAGCAAGATAGTTATGGATGATCTCCCTGGAGGGCCTGAGGCTTTTGAACTTGCATCCAAGTTTTGCTATGGAATTGCAATTGATTTAACATCAGGCAACATCTCTGGCCTTAGATGCGCTGCCGAGTACCTTGAAATGACAGAGGACCTAGAAGAGGGCAATCTCATATTCAAGACAGAAGCCTTTCTTAGCTATGTGGTTTTGTCCTCATGGAGAGACTCCATAGTGGTGTTGAAGAGCTGCGAGAAGCTGTCGCCATGGGCAGAGAATCTTCAAATTGTGAGAAGATGCAGTGAGTCCATAGCATGGAAAGCATGTGCCAATCCAAAGGGAATAAGGTGGTCATACACTGGAAGGGCACCAAAAGTTGCAAGTCCAAAATGGAATGACATGAAGAACTCAAGCCCAAGTAGGAACCAGCAGGTTCCTCCTGATTGGTGGTTTGAGGATGTTTCAATCCTTAGGATTGATCACTTTGTTAGAGTCATCACTGCTATCAAGGTAAAGGGTATGAGGTTTGAGTTGATTGGTGCTGGAATAATGCATTATGCAACTAAGTGGCTACCTGGTTTGATGAATATTGGCACAGCAATCCCAGGAGAAGAAGGAAGCAATAGTAGTACTAGTAACAGTAGTTCTAGTAATGGTGGTGGTGGTGGTAGTTGGAAAGGTGGACTTCATATGATTGTGGCTGGACCTAGAGATGACACTTCAACTCTTCAAGCTAAAGATCAAAGGATGATCGTTGAGAGCCTCGTCAGCATAATCCCCCCACAGAAGGACAGTGTCTCATGCAGCTTCCTTCTCAGGCTTCTCAGAATGGCAAACAACATGTTGAAGGTTGCACCTGCATTGATTACTGAATTGGAAAAAAGGGTGGGAATGCAGTTTGAGCAAGCTACACTGGCTGATCTTCTAATCCCATGTTATAACAAAAATGAGACTACTTATGATGTGGATCTTGTTCAGAGGCTGCTAGAGCATTTTCTTGTTCAAGAGCAAACTGAAAGTTCAAGCCCAAGCAGACCACCCTTTTCTGACAAGCATGTGAGCAGTAACATTAATGCAAAGACAAGAGTGGCAAGACTTGTGGACAGTTATCTTACTGAGGTTTCCAGAGATAGAAACCTTTCCCTCACAAAGTTTCAGGTTCTTGCAGAAGCCTTGCCTGAGTCAGCTAGGACTTCTGATGATGGACTCTACAGAGCAGTTGATTCATATCTTAAGGCACATCCAACACTAACGGAGCATGAAAGGAAGCGACTCTGCCGTGTAATGGATTGTCAGAAACTCTCCATTGATGCCTGTATGCATGCTGCTCAAAATGAAAGGCTTCCATTGAGGGTAGTGGTGCAAGTGCTATTCTCTGAACAGGTGAAGATAAGCAATGCACTAGCCAACAGTTCTCTGAAAGAAGGTGCTGAATCTCACTACCAGCCAATGATTCCAAACCGGAAAACACTACTCGAAGGGACGCCACAATCATTCCAAGAAGGATGGACAGCAGCTAAGAAAGACATCAACACACTCAAGTTTGAGCTGGAGACTGTGAAAACCAAGTACTTGGAGCTTCAAAATGACATGGAAAATCTGCAGAGACAGTTTGATAAGTTGCTGAAGCAGAAGCACACTTCAGCATGGACCAGTGGGTGGAAGAAACTAAGCAAACTCACAAAAATGACTAATGAGGAAAATCATGATATTTCACCTCAGATTCCAACTTCAGAAGAACAGAACAGGAAGACAACAACTAGAAGGTGGAGAAACTCGATATCCTGA

Predicted protein sequences of Glyma07g29960

Limit To All Plant Sequences

>Glyma07g29960.2   sequence type=predicted peptide   gene model=Glyma07g29960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLFCAESDKFEISPSTPMWGSSSLFISFLSLLIHFALWFTPSLFFFSHLEATFLGKTSLPCSCVVSSGLVLSMWESESESGAGREYGSGLLTSTKHSVKTEGFQQRGNSWYVSADIPSDLLVQIGDANFHLHKYPLLSRSGKLNRIIYDSRDPDLSKIVMDDLPGGPEAFELASKFCYGIAIDLTSGNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSIVVLKSCEKLSPWAENLQIVRRCSESIAWKACANPKGIRWSYTGRAPKVASPKWNDMKNSSPSRNQQVPPDWWFEDVSILRIDHFVRVITAIKVKGMRFELIGAGIMHYATKWLPGLMNIGTAIPGEEGSNSSTSNSSSSNGGGGGSWKGGLHMIVAGPRDDTSTLQAKDQRMIVESLVSIIPPQKDSVSCSFLLRLLRMANNMLKVAPALITELEKRVGMQFEQATLADLLIPCYNKNETTYDVDLVQRLLEHFLVQEQTESSSPSRPPFSDKHVSSNINAKTRVARLVDSYLTEVSRDRNLSLTKFQVLAEALPESARTSDDGLYRAVDSYLKAHPTLTEHERKRLCRVMDCQKLSIDACMHAAQNERLPLRVVVQVLFSEQVKISNALANSSLKEGAESHYQPMIPNRKTLLEGTPQSFQEGWTAAKKDINTLKFELETVKTKYLELQNDMENLQRQFDKLLKQKHTSAWTSGWKKLSKLTKMTNEENHDISPQIPTSEEQNRKTTTRRWRNSIS*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain