Glyma07g29940 - SoyBase

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Report for Sequence Feature Glyma07g29940

Feature Type:	gene_model
Chromosome:	Gm07
Start:	35025153
stop:	35026954
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g29940

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G36690	AT	Annotation by Michelle Graham. TAIR10: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein \| chr2:15379930-15381987 FORWARD LENGTH=366	SoyBase	E_val: 2.00E-43	ISS
GO:0009058	GO-bp	Annotation by Michelle Graham. GO Biological Process: biosynthetic process	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0016706	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	SoyBase	N/A	ISS
PTHR10209	Panther	FE(II)/ ASCORBATE OXIDASE SUPERFAMILY	JGI		ISS
PTHR10209:SF55	Panther	OXIDOREDUCTASE, 2OG-FE(II) OXYGENASE FAMILY PROTEI	JGI		ISS
PF03171	PFAM	2OG-Fe(II) oxygenase superfamily	JGI		ISS
UniRef100_G7JV63	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Flavonol synthase/flavanone 3-hydroxylase n=1 Tax=Medicago truncatula RepID=G7JV63_MEDTR	SoyBase	E_val: 7.00E-112	ISS
UniRef100_I1KL39	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KL39_SOYBN	SoyBase	E_val: 1.00E-137	ISS

Expression Patterns of Glyma07g29940

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g29940

Paralog	Evidence	Comments
Glyma08g07460	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g29940 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g180700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g29940

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g29940

Limit To All Plant Sequences

>Glyma07g29940.2   sequence type=CDS   gene model=Glyma07g29940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATAAATGAATATGTGATTTATGGAGACAGCAAACGAAGGCCACATTTCTCCCCAAGAAAAGTGAATATGCGATATATGGAGACAACAAACAAAGGTCACTTGATCAACAACCCCAACAAGGATACATCAGCAGAGTACTGTAGAAGAACCTGGAAAGTGGGAAAGGAACTACTAAAAGGAATATCAGAAAGCTTGGGATTGGAAGCCAATTACATAGAGGATACAATGAACCTAGATTCTGGTTGGCAAATGATAGCAGCAAATATGTATCCACCTTGTCCACAACCTGAACTTGCAATGGGAATACCCCCACATTCTGATCATGGCCTCTTGAACCTCCTCATGCAGAACGGGGTTAGTGGCCTTCAAGTGCTCCACAATGGCAAGTGGATCAATGTCAGTTCAACTGTAAACTGCTTGTTAGTCTTTGTGTCTGATCACCTTGAGGTTGTGAGCAATGGCAAGTACAAGAGTGTATTACATAGAGCAGTTGTGAGCAACAAAGCTACAAGAATGTCCTTAGCTGTAGTAATTGCACCATCCTTAGACACTGTGGTGGAACCAGCTAATGAGTTACTAGACAATCAAAGGAATCCAGCAGCGTATGTTGGGATGAAACATACAGACTATATGCAACTTCAGAGAAGCAACCGGCTTAATGGGAAGGCTGTGCTAGACAAAGTTAAAATCTGA

Predicted protein sequences of Glyma07g29940

Limit To All Plant Sequences

>Glyma07g29940.2   sequence type=predicted peptide   gene model=Glyma07g29940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
INEYVIYGDSKRRPHFSPRKVNMRYMETTNKGHLINNPNKDTSAEYCRRTWKVGKELLKGISESLGLEANYIEDTMNLDSGWQMIAANMYPPCPQPELAMGIPPHSDHGLLNLLMQNGVSGLQVLHNGKWINVSSTVNCLLVFVSDHLEVVSNGKYKSVLHRAVVSNKATRMSLAVVIAPSLDTVVEPANELLDNQRNPAAYVGMKHTDYMQLQRSNRLNGKAVLDKVKI*

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