SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G21970 | AT | Annotation by Michelle Graham. TAIR10: Histone superfamily protein | chr1:7727750-7729571 REVERSE LENGTH=238 | SoyBase | E_val: 1.00E-28 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0009738 | GO-bp | Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009785 | GO-bp | Annotation by Michelle Graham. GO Biological Process: blue light signaling pathway | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0010262 | GO-bp | Annotation by Michelle Graham. GO Biological Process: somatic embryogenesis | SoyBase | N/A | ISS |
| GO:0045723 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of fatty acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0043565 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding | SoyBase | N/A | ISS |
| KOG0869 | KOG | CCAAT-binding factor, subunit A (HAP3) | JGI | ISS | |
| PTHR11064 | Panther | TATA-BINDING PROTEIN-ASSOCIATED PHOSPHOPROTEIN | JGI | ISS | |
| PF00808 | PFAM | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | JGI | ISS | |
| UniRef100_E5GAV8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: CCAAT-box binding factor HAP3-like protein n=1 Tax=Pinus contorta RepID=E5GAV8_PINCO | SoyBase | E_val: 2.00E-32 | ISS |
| UniRef100_I1JDJ5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1JDJ5_SOYBN | SoyBase | E_val: 1.00E-85 | ISS |
|
Glyma07g29695 not represented in the dataset |
Glyma07g29695 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g180300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g29695.1 sequence type=CDS gene model=Glyma07g29695 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAATTTCACTGCCAATCAACTCAAATAACGGTGATCGAGTTCCTAATTTGGTTTTGCGAGATAAAAGCAAGATGCCAATTACAAATATGATGAAAATCATGAGTCAGATTCTTCTAAATAATGTACAAGTTTCATATGATACCATGGATATGATTCAACAAAGTGCTACAAAGTACATAAACTTTGTAACTAGAAAAGCCAAGGATCGATGCCAAAGTGAGTGTAGAAAGATTATGAATGCAGAGGACCTATTATGGGCTATAGAGGAATTGGGCTTTAATGACTACGTTGAGCCTCTCACTACTTTCATCCAACGCTATCGTAACATTGAAGGAGTTGATCTCTTCACTACCCATAAGGAGCCAATTTCTCACATTGAAAACCATGGGCCTAGTCTTGGGCCTGAGCCTAACCTTATGTCCACTTTGGAGATGCTTCATCCTCCACAACCACCACAAGTTAATTCTTCTCAGCCAAAATTTTCCATCATCCCAAACACAAATCTGGAAATGCTTTACCCAAATGAAATGAGTTCTACCAAAATACATTTGGTGTTGGTTGTTCAAATGATGTTTTCAACAACATTGATGTTTCTACTTTCTTCAATCATGATCAACATTGAGATGATAATAGAAGAAATTCAACTGCAATTAACAATTATGGCAATGGACTATGATATAGGCAATAAGTAG
>Glyma07g29695.1 sequence type=predicted peptide gene model=Glyma07g29695 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAISLPINSNNGDRVPNLVLRDKSKMPITNMMKIMSQILLNNVQVSYDTMDMIQQSATKYINFVTRKAKDRCQSECRKIMNAEDLLWAIEELGFNDYVEPLTTFIQRYRNIEGVDLFTTHKEPISHIENHGPSLGPEPNLMSTLEMLHPPQPPQVNSSQPKFSIIPNTNLEMLYPNEMSSTKIHLVLVVQMMFSTTLMFLLSSIMINIEMIIEEIQLQLTIMAMDYDIGNK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
