SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G15820 | AT | Annotation by Michelle Graham. TAIR10: endonucleases | chr2:6888734-6891360 REVERSE LENGTH=849 | SoyBase | E_val: 0 | ISS |
| GO:0000373 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Group II intron splicing | SoyBase | N/A | ISS |
| GO:0045292 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mRNA cis splicing, via spliceosome | SoyBase | N/A | ISS |
| GO:0048564 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photosystem I assembly | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0004519 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: endonuclease activity | SoyBase | N/A | ISS |
| PTHR24015 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PF01535 | PFAM | PPR repeat | JGI | ISS | |
| PF03161 | PFAM | LAGLIDADG DNA endonuclease family | JGI | ISS | |
| UniRef100_G7I8V5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=2 Tax=Medicago truncatula RepID=G7I8V5_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002337D54 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002337D54 related cluster n=1 Tax=unknown RepID=UPI0002337D54 | SoyBase | E_val: 0 | ISS |
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Glyma07g29520 not represented in the dataset |
Glyma07g29520 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g178800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g29520.1 sequence type=CDS gene model=Glyma07g29520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGGGGAGGTTTGTGACACGTCACGACCTTCTTCTTCCACTTCCACTAACTACTCTTTCCCCAAACCCTAATCCTCCAACCATGCGCTCTTCCTCCACCCTCCTCCACTCTCTCGCTCTCTCTCTCTCCCATCTCCACCACCCCTTCCTCTCCGCTCCTCCGCTCTTCCCGCGCCTCGCCGTGACGGTGCCGGAAAGGGAGGTTCTCAGGTCGGCGGAGGCGGAGGCGAGGGGGCTGCGGGGGCCGGAGGTGGAGGTGGGGGAGCTGAGCGCGGTTCCGGAAGAGTGGCGGAGGGCGAGGGTGGCGTGGCTCTGCAAGGAGCTGCCCGCGCACAAGGCGGGGACTCTGGTGAGGATACTGAACGCGCAGAAGAAGTGGATGTGGCAGGAGGACGCCACCTACGTCCTTGTCCACTGCCTCCGCGTTCGCGAAAACGAAACCGCATTCAAGGTATACAAGTGGATGATGCAACGTAATTGGTATCGATTTGATTTTGCTCTTGCTACCAAGCTAGCAGATTACATGGGTAAAGAGGGAAAGTTTTCAAAGTGCCGTGAGGTATTTGATGATATTATTAATCAAGGCCGTGTTCCTAGTGAGTCAACCTTCCATATATTAGTTGTTGCTTATCTCAGTGCTCCTGTTCAAGGTTGTTTGGATGAAGCATGCAGCATTTACAATCGGATGATTCAGTTGGGTGGTTACCAACCCCGTCTTAGCATACATAATTCCGTCTTCAAAGCTCTTGTAAGCAATCCGGGGATCTTGTCAAAGAATTACCTTAAGCAAGCTGAGTTTATATATCATCATTTGGTTACAACTGGACTTGATGTGCATAAAGAAATTTATGGGGGCCTAATTTGGCTGCATAGCTATCAGGATTCCATAGATAAAGAAAGGATAGCAGAATTGAGGGAAGCAATGCTCCGTGCTGGATTTGAGGAGGATAGAGAGGTGCTATTATCAATCTTGAGGGCTTGTGCAAGGGAAGGGGAGGTGGAGGAAGCAGAAAAGAGTTGGGTCAAACTTCTCGAGTTTGAAAATGACCCCCCAGCTCTGGCTTTTGTGTATAAAATGGAAGTCTACTCAAAGGTTGGCATGCCGATGAAGTCATTGGATATATTCAGGGAAATGCAGTCAAAACTAGGTAGAACAGATGTTGCAGCATATAATCAAATAATAGAGATACTATGCAAAGCACAAGAATCAGAATTGGCCGAATCAATCATGGCAGATTTTGTCAAGAGTGATCTGAAGCCCCTTACGCCATCGTATGTTTATTTACTAAGCATGTACTTCAATTTGGAATTACATGACAAACTGGAAGAGTCATTCTACAAGTGCTTGGAGAAATGTCGTCCTAATTGTGCTATATACAGTATATATCTGAATTCTTTGGTGAAAATAGGTAATATTGACAAGGCCGAGGATATATTTAACCAAATGAATCATGATGCGACCATCGGTGTTAATGCTCGATCATGTAACATCATCTTAAGTGGATACCTGTCTTCAGGAAAACACTTAAAGGCAGAGAAGGTCTATGACTTTATGTGTCTAAAAAAGTATGAAATTGAATCCTCATTAATGGAACAGCTTGACTATATCCTGAGCTTGAAAAGGAAAGTTGTTAAAAGACCAATAAGCATGAAGTTAAGCAAAGAGCAAAGAGAAATCATGATTGGGTTGCTTTTAGGTGGTTTGCGAATTGATTCTGATGACCGAAGGAGGAATCACATTATTCGTTTTGATTTTGATGGCAATTCCGGCAGCCATTATGTCCTGAAGAGTCATATATATCACCTGTTTTTTGAGTGGCTGCATCCTACTTGTAAGCCAGGTGACAATAGTGAAAACATACCGGATAAGTTTTGCACCATTGCAAGCTCTCATTTTGGCTTTTATGCAGATCAGTTTTGGTCAAAAGGTGAACCTAGTATTCCAAAACTAGTCCATAGGTGGTTGTCACCATGTGTTCTTGCATACTGGTACATGTATGGTGGCCATCGAAATTCATCAGGGGATATTTTGCTGAAAGTAAAGGGAAGTCGTGAGGGTGTTGAGAACATTGTCAGAAAATTTAAAGGCATGTCCATGGATTGTAAAGTCAAGAGGAAAGGAAGGGTTTTTTGGATTGGTATTCTGGGAAGCAATTCAACTTGGTTCTGGAAATTGGTTGAGCCATATGTCATAGAAAATAAAGATTTTGCTGAAGCAGGTGATGAGACAAAGGAGCAGGATGCAAAGGAAACTGAAGATATTAACTTCAATAGTGATTCAGATGAATGA
>Glyma07g29520.1 sequence type=predicted peptide gene model=Glyma07g29520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVGRFVTRHDLLLPLPLTTLSPNPNPPTMRSSSTLLHSLALSLSHLHHPFLSAPPLFPRLAVTVPEREVLRSAEAEARGLRGPEVEVGELSAVPEEWRRARVAWLCKELPAHKAGTLVRILNAQKKWMWQEDATYVLVHCLRVRENETAFKVYKWMMQRNWYRFDFALATKLADYMGKEGKFSKCREVFDDIINQGRVPSESTFHILVVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRLSIHNSVFKALVSNPGILSKNYLKQAEFIYHHLVTTGLDVHKEIYGGLIWLHSYQDSIDKERIAELREAMLRAGFEEDREVLLSILRACAREGEVEEAEKSWVKLLEFENDPPALAFVYKMEVYSKVGMPMKSLDIFREMQSKLGRTDVAAYNQIIEILCKAQESELAESIMADFVKSDLKPLTPSYVYLLSMYFNLELHDKLEESFYKCLEKCRPNCAIYSIYLNSLVKIGNIDKAEDIFNQMNHDATIGVNARSCNIILSGYLSSGKHLKAEKVYDFMCLKKYEIESSLMEQLDYILSLKRKVVKRPISMKLSKEQREIMIGLLLGGLRIDSDDRRRNHIIRFDFDGNSGSHYVLKSHIYHLFFEWLHPTCKPGDNSENIPDKFCTIASSHFGFYADQFWSKGEPSIPKLVHRWLSPCVLAYWYMYGGHRNSSGDILLKVKGSREGVENIVRKFKGMSMDCKVKRKGRVFWIGILGSNSTWFWKLVEPYVIENKDFAEAGDETKEQDAKETEDINFNSDSDE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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