Glyma07g29490 - SoyBase

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Report for Sequence Feature Glyma07g29490

Feature Type:	gene_model
Chromosome:	Gm07
Start:	34325745
stop:	34328741
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g29490

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G37180	AT	Annotation by Michelle Graham. TAIR10: Homeodomain-like superfamily protein \| chr4:17504648-17506107 FORWARD LENGTH=356	SoyBase	E_val: 2.00E-49	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF00249	PFAM	Myb-like DNA-binding domain	JGI		ISS
UniRef100_G7JMI0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Two-component response regulator ARR14 n=1 Tax=Medicago truncatula RepID=G7JMI0_MEDTR	SoyBase	E_val: 1.00E-72	ISS
UniRef100_I1KL26	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KL26_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g29490

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g29490

Paralog	Evidence	Comments
Glyma20g01260	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g29490 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g178500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g29490

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g29490

Limit To All Plant Sequences

>Glyma07g29490.1   sequence type=CDS   gene model=Glyma07g29490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTTGGTTATTCCTGAAGAAGAACTAAGCTTAGATTTGAGACCCTCTTTTGTTCCAAAAACCATCACTGATTTTCTCTGCCACCTTTCCACCACCCCAAATGCATCCGTCAAGGTGTCCTTGCTCGATGACTTTGTCCACAGATTGCAACTCGAATTGGCCAAGATCCAAGCATTCAAACGCGAACTTCCTCTCTGCATGTTCCTCTTAAATGATGCAATTTCAGCGTTGAAGGTGGAATCAGAAAAATGCATGGCTTGCAAGTCTGAGCCAGTGTTGGAGGAGTTCATTCCTCTGAAGAAAGAGTGTGATCAGAGGGAGGAAAGTGAGAAGGAGAAGGAATGCAGGGACAAGAAGAGTTGGATGAGTTCTTTTCAGCTTTGGAACACTGATGATAAAGCTGATATTAACAACAATGCATATGAATGTGACAAAAAACAAAACTACGGAGTTGAAGACAAGAATAATAGAGAAGAAAGAAAATCTGTGGCCAAGGACTTGTTCCAATATGGTGGAATTAGAAATGGAGAGAAGGGGTTTGTTATGCCTTTTTCCACTTACCCTGCATCAAAGGAAGTAAAGGAAGATTGTGTTTTCAATGGACTTTCTCTTCAGACACCTGGAACTGCAGTGAAGAACACAAGGGAGGGATCTGGTTGCAGAACCAGCTCTTGCAGGGTGGTTTCCTCGGCTCCTTCACCGCTGCGTCAGCCACAAAGTGGCCGGAAACAAAGGCGGTGCTGGTCGCCGGAGTTGCATAGCCGGTTTGTTAAGGCTTTAGAGGAGCTTGGAGGTTCTCAAGCAACTACTCCAAAGCAAATTAGGGAACTCATGAGGGTAGATGGCCTGACCAATGATGAAGTAAAGAGTCATTTACAAAAATATCGACTTCATACACAGCGAGTTCCAGTTGCTAAAGCTGCAAATTCTAATCGCTCTGCCGTAGCTCTTGGAGGCTTGTGGATGCACAATGAATCCTTAAAGGGTAGAAGTTCTGGTTCTCCTCAAGGCCCTCTCCAATTAGCTACACAATCGGGGGAAGCGACATCCCGAACTGAAGGTGACAACATGATAGATGATGATGTAAAATCAGACTTATAA

Predicted protein sequences of Glyma07g29490

Limit To All Plant Sequences

>Glyma07g29490.1   sequence type=predicted peptide   gene model=Glyma07g29490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGLVIPEEELSLDLRPSFVPKTITDFLCHLSTTPNASVKVSLLDDFVHRLQLELAKIQAFKRELPLCMFLLNDAISALKVESEKCMACKSEPVLEEFIPLKKECDQREESEKEKECRDKKSWMSSFQLWNTDDKADINNNAYECDKKQNYGVEDKNNREERKSVAKDLFQYGGIRNGEKGFVMPFSTYPASKEVKEDCVFNGLSLQTPGTAVKNTREGSGCRTSSCRVVSSAPSPLRQPQSGRKQRRCWSPELHSRFVKALEELGGSQATTPKQIRELMRVDGLTNDEVKSHLQKYRLHTQRVPVAKAANSNRSAVALGGLWMHNESLKGRSSGSPQGPLQLATQSGEATSRTEGDNMIDDDVKSDL*

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