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Report for Sequence Feature Glyma07g29430

Feature Type:gene_model
Chromosome:Gm07
Start:34289062
stop:34290312
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma07g29430
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G15780AT Annotation by Michelle Graham. TAIR10: Cupredoxin superfamily protein | chr2:6873666-6874701 REVERSE LENGTH=257 SoyBaseE_val: 2.00E-47ISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0005507GO-mf Annotation by Michelle Graham. GO Molecular Function: copper ion binding SoyBaseN/AISS
GO:0009055GO-mf Annotation by Michelle Graham. GO Molecular Function: electron carrier activity SoyBaseN/AISS
PF02298PFAM Plastocyanin-like domain JGI ISS
UniRef100_B6TG98UniRef Annotation by Michelle Graham. Most informative UniRef hit: Copper ion binding protein n=1 Tax=Zea mays RepID=B6TG98_MAIZE SoyBaseE_val: 5.00E-37ISS
UniRef100_UPI0002337C15UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002337C15 related cluster n=1 Tax=unknown RepID=UPI0002337C15 SoyBaseE_val: 5.00E-129ISS

Expression Patterns of Glyma07g29430
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g29430 not represented in the dataset
Glyma07g29430 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma07g29430 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.07g178300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma07g29430
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma07g29430
>Glyma07g29430.1   sequence type=CDS   gene model=Glyma07g29430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGTGAAGTTTAGACATGTAGTGATGATACTAGTTGTTATAAGTGCTTCAATGTTTTCAGTGAGCATGGCCAATACGGACTGGTCCTTTGGTTTCAACTACACTGATTGGTGGTCTAGATTTGGGAATCATCCTCAAAACAAAACACAACAACAATCCAGGCAGATTCTCGTGGGTGGTTCTGAGCATTGGCACTACGGTTTCAACTACACCGATTGGGCCTTCAATAATGCCCCATTTTACCTCAACGATACTCTGGTTTTCAAATATGATGCTCCAAACCCCACTAGTTTCCCACACAGCGTGTACATGTTCAAAAGTTTTGGGAGCTTCTTGAAGTGTGACATTAAAAAGGCTAAGATGTTGGCAAATCCCACGCAAGGCACAGGAGAGGGCTTCAAGTTTGTGTTGAAGAGGTGGCAGCCTCACTACTTTGCCTGTGGCGAGCGAAACGGCTTCCATTGCAATAACGGTACCATGAAGTTTGCCGTGATGCCTATGTTTCGTCCTTCCTGGCAGTGGCCATGA
Predicted protein sequences of Glyma07g29430
>Glyma07g29430.1   sequence type=predicted peptide   gene model=Glyma07g29430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGVKFRHVVMILVVISASMFSVSMANTDWSFGFNYTDWWSRFGNHPQNKTQQQSRQILVGGSEHWHYGFNYTDWAFNNAPFYLNDTLVFKYDAPNPTSFPHSVYMFKSFGSFLKCDIKKAKMLANPTQGTGEGFKFVLKRWQPHYFACGERNGFHCNNGTMKFAVMPMFRPSWQWP*






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