SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G25240 | AT | Annotation by Michelle Graham. TAIR10: ENTH/VHS/GAT family protein | chr1:8845231-8846361 FORWARD LENGTH=376 | SoyBase | E_val: 6.00E-92 | ISS |
| GO:0048268 | GO-bp | Annotation by Michelle Graham. GO Biological Process: clathrin coat assembly | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0030118 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: clathrin coat | SoyBase | N/A | ISS |
| GO:0005543 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phospholipid binding | SoyBase | N/A | ISS |
| GO:0005545 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 1-phosphatidylinositol binding | SoyBase | N/A | ISS |
| GO:0030276 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: clathrin binding | SoyBase | N/A | ISS |
| PTHR22951 | Panther | CLATHRIN ASSEMBLY PROTEIN | JGI | ISS | |
| PTHR22951:SF7 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF07651 | PFAM | ANTH domain | JGI | ISS | |
| UniRef100_B9S7D9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Clathrin assembly protein, putative n=1 Tax=Ricinus communis RepID=B9S7D9_RICCO | SoyBase | E_val: 6.00E-101 | ISS |
| UniRef100_I1KL17 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KL17_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma07g29280 not represented in the dataset |
Glyma07g29280 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma20g01340 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g178000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g29280.2 sequence type=CDS gene model=Glyma07g29280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGGCTATGGGTTAAGGCCTCGGGTGCATTGAAAGATACGTATAGCATTTGGGTTGCAAAGCTCTCACCAAGTGGTCCATGTAGGAACCCTGATCTTGAAATCGCGATCATCAAGGCCACTAGCCATAATGAACCGTGCATGGATTACAAGAACGTTCAAAGGGTTTTCAAATGGCTACGTACCTCACCTTTGTACCTTAAACCTCTTCTCTACACAGTCTCCATGAGAATGGAGAAGACTCGTTCATGGGTCGTGGCACTCAAAGGGTTGATGCTCACTCATGGGGTATTTTGTTTTGACTATCCCGCGATGAAAAAAATGGGAAGATTACCATTTGATTTGTCACATTTTAGCGACGTGCATGTAAACCCTAATAAGGCGTGGCTTTTCAATGCATTTGTTCGTTCCTATTTTGCGTATTTGGACCAAAAATCCGCGTTTGTACGATTGGAGGCAACTAAAGAGACCAAGCGTGGGAGCAAGGAGAAGGAAGAGGCCGTGATGGAAGAGCTGCAAGACTTGGAGAAGTTCCTTGGTTTGATTGATTTGCTTCTACAAATCAAGCCTAGTAACCCTAACATGAACGTGGTGCTTATTCTTGAGGTCATGGATTGTGTTATGGACGAGGTTTTGGAAGTCTATGATAAATTTTCCATGAGGGTTCATCGAGTGGTATCGAGGATAATTGATATGGGTGGGAAAGAAGAAGCAAGAGTTGGTCTTGATTTTGTGAGAAAAGTTGAATTGCAAGGTGGTAAGATCTCTATGTACTTTGATTTTTGTAGGGACATTGGGGTCATTAATGTTTCCGAGTGCCCCGAAATCGTGAGGATTGATGAGAAAGACATTCATGAACTAATAAGCATAAGGGATGGTGGTGTCTCCGAGAAGAAAAATTTGAAGTTTGATAATAATAATAATTATAATGATAATAATACTATTGTCGTGTATGAGGGTAATAATTCTAGAGCCATTACCACCATTTCGGATTTCAAGACGGTGATCACTGATCAATGGGAGGTGTTTGATGATGTTATGGATAGTGCCTCCAATGGTACAAGCCTGCATATCGCCACAAGTACTAACCCTTTTGTGGATTCTTTGAGCATCGTACATTATATTCCCGTTTGCAATACTCATATTCTTCCAGATTTAATTGTTTTGTAG
>Glyma07g29280.2 sequence type=predicted peptide gene model=Glyma07g29280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRLWVKASGALKDTYSIWVAKLSPSGPCRNPDLEIAIIKATSHNEPCMDYKNVQRVFKWLRTSPLYLKPLLYTVSMRMEKTRSWVVALKGLMLTHGVFCFDYPAMKKMGRLPFDLSHFSDVHVNPNKAWLFNAFVRSYFAYLDQKSAFVRLEATKETKRGSKEKEEAVMEELQDLEKFLGLIDLLLQIKPSNPNMNVVLILEVMDCVMDEVLEVYDKFSMRVHRVVSRIIDMGGKEEARVGLDFVRKVELQGGKISMYFDFCRDIGVINVSECPEIVRIDEKDIHELISIRDGGVSEKKNLKFDNNNNYNDNNTIVVYEGNNSRAITTISDFKTVITDQWEVFDDVMDSASNGTSLHIATSTNPFVDSLSIVHYIPVCNTHILPDLIVL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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