Glyma07g29110 - SoyBase

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Report for Sequence Feature Glyma07g29110

Feature Type:	gene_model
Chromosome:	Gm07
Start:	33634752
stop:	33641693
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g29110

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G39710	AT	Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein \| chr5:15895729-15897972 FORWARD LENGTH=747	SoyBase	E_val: 0	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_D7MJJ2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: EMB2745 n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7MJJ2_ARALL	SoyBase	E_val: 0	ISS
UniRef100_UPI000233D970	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233D970 related cluster n=1 Tax=unknown RepID=UPI000233D970	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g29110

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma07g29110 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g177500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g29110

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g29110

Limit To All Plant Sequences

>Glyma07g29110.2   sequence type=CDS   gene model=Glyma07g29110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCACCCTCAAAGACTCTCGCATCCCTCTTCTTACATTCTTCTCAATTCCCAATCCAACCAACACCCCCTCCTCAGGCCCATACTCTGGTCCAGAACTTCTTCACGCCGCACTACAAGTGCCTCACCCTCCACATACTCATTCGCTTCAAGCTCTACCGCATCGCCCACTCCCTCGTTGCGGACCTCACCAGCACCCTCCCTGACCCCACCGACGTCGCTCTCTTCCACCACCTCCGAGACAGCTTCCACCTATGCTCCTCCAACTCCTCCTCCGCCGTCTTCAACCTTGTCATCAAATCCCTCACCCGCCTCAGCCTCGTCCCCAATGCCCTTACCATCCTCCACCTAGCCAACTGCCACGGCTTCACCCCCACCATCCTCTCCTACAACGCCGTCCTCGACGTGCATCGAACCATTATCGCGTCGACAACGCCGAACGAGTGGGACCTGGAGAAAGGGTTAGGGTTTATGCGCAAAATGGAAAAGGAAGGAATTTCACCCAATGTAGTTACTTATAACACGTTAATTGATGCTTCTTGTAAGAAGAAGAAGGTGAAGGAGGCAATGGCTCTGCTGAGAGTGATGGCAGTGAGAGGTGTCACTGCGAATTTGATTTCGTACAATTCAATGATTAATGGATTGTGTGGTGAAGGGAGAATGGGCGAGGCTGGGGAATTTGTTGAAGAGATGAGGGAGAAATGGTTGGTTCCTGATGAGGTTACCTATAATACTCTTGTTAATGGGTTTTGCAGAAAAGGGAATTTGCATCAGGGGTTTGTGTTGCTTTCGGAGATGGTTGGTAAAGGGTTGTCTCCCAATGTTGTAACTTATACTACTTTGATTAACTATATGTGTAAGGTTGGATATTTGAATCGCGCTGTGGAGATTTTCCATCAGATCCGTGGAAGCGGGCTGAGGCCGAATGAAAGGACTTACAGTACTTTGATTGATGGGTTCTGCCATAAAGGGTTGATGAATGAAGCTTATAAGGTCTTGAGTGAGATGATTGTTAGTGGGTTTTCGCCATCAGTTGTGACTTACAACACACTTGTCTGTGGATATTGCTTCTTGGGGAAGGTGGAGGAGGCTGTGGGAATTTTGAGGGGGATGGTTGAGAGAGGGTTGCCTCTTGATGTTGTTACTACATCATGTGCTTATAGCACTGCTATAGCTGGGTTTTGTCGGGAGCGTGAGCTGGGGAAAGCGTTTCAAATGAAGAAGGAGATGGTTGAGGAGGGTTTCTTGCCTGATGTGGTCGCATATTCATCGCTCGGACAACCCATCCCTTGTGTTCAGATGCTTTACAACAAGAGACTCACAGTCTCTTTACCAATCTCATTGAATAAGAAGAATGGAAGAAGAATTCTCTCTTCAAGAGAAGAATATTACAATGAAGATCATGTAAGAATCCTTATAGATTTTGCAAGTGTTTGGTCAAGGATTTCTTTTGAGAGAGCATTTGACAATGAAGTTCTTTTGGAATCTCTCTCATTTTTGATTAATGCTTATTGTGTTGCGGGTGAGTCAAGTAAGGCTCTTCATTTGCATGATGAAATGATGCAGAGAGGTTTTTTGCTCGATAATGTTACCTATAGTGTGCTTATTAATGGACTTAATAAGAAATCTAGGACAAAAGTAGTAAAGAGGCTTCTTCTGAAGTTGTTTTATGAGGAGTCTGTACCAGATGACGTAACATACAATACACTAATAGAAAACTGTAGTAATAATGAATTTAAGAGTATGGAAGGTCTTGTTAAAGGATTCTACATGAAGGGTTTGATGAATGAAGTAGATCGACCTAATGCATCAATTTATAATTTAATGATACATGGACATGGTAGAAGCGGGAATGTTCACAAGGCATATAATCTGTATATGGAGTTGGAGCATTATGCACTAGCTAGGGAAAGGATGAATGATGAGCTGAGTCAAGTATTGCTAAACATATTGAGGAGCTGTAAGCTCAATGATGCTAAGGTAGCTAAAGTACTTCTTGAGGTTAACTTTAAAGAAGGTAACATGGATTCTTTTTTGAGTGTGCTAACTAAAATGGTTAAGGATGGCCTACTACCTGATGGTGGAATTCATTCATCTGTGCCAACTAGTACCTAA

Predicted protein sequences of Glyma07g29110

Limit To All Plant Sequences

>Glyma07g29110.2   sequence type=predicted peptide   gene model=Glyma07g29110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPPSKTLASLFLHSSQFPIQPTPPPQAHTLVQNFFTPHYKCLTLHILIRFKLYRIAHSLVADLTSTLPDPTDVALFHHLRDSFHLCSSNSSSAVFNLVIKSLTRLSLVPNALTILHLANCHGFTPTILSYNAVLDVHRTIIASTTPNEWDLEKGLGFMRKMEKEGISPNVVTYNTLIDASCKKKKVKEAMALLRVMAVRGVTANLISYNSMINGLCGEGRMGEAGEFVEEMREKWLVPDEVTYNTLVNGFCRKGNLHQGFVLLSEMVGKGLSPNVVTYTTLINYMCKVGYLNRAVEIFHQIRGSGLRPNERTYSTLIDGFCHKGLMNEAYKVLSEMIVSGFSPSVVTYNTLVCGYCFLGKVEEAVGILRGMVERGLPLDVVTTSCAYSTAIAGFCRERELGKAFQMKKEMVEEGFLPDVVAYSSLGQPIPCVQMLYNKRLTVSLPISLNKKNGRRILSSREEYYNEDHVRILIDFASVWSRISFERAFDNEVLLESLSFLINAYCVAGESSKALHLHDEMMQRGFLLDNVTYSVLINGLNKKSRTKVVKRLLLKLFYEESVPDDVTYNTLIENCSNNEFKSMEGLVKGFYMKGLMNEVDRPNASIYNLMIHGHGRSGNVHKAYNLYMELEHYALARERMNDELSQVLLNILRSCKLNDAKVAKVLLEVNFKEGNMDSFLSVLTKMVKDGLLPDGGIHSSVPTST*

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