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Report for Sequence Feature Glyma07g29078

Feature Type:gene_model
Chromosome:Gm07
Start:33602585
stop:33602997
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma07g29078
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G68580AT Annotation by Michelle Graham. TAIR10: agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein | chr1:25753582-25755059 FORWARD LENGTH=396 SoyBaseE_val: 1.00E-29ISS
GO:0006333GO-bp Annotation by Michelle Graham. GO Biological Process: chromatin assembly or disassembly SoyBaseN/AISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003723GO-mf Annotation by Michelle Graham. GO Molecular Function: RNA binding SoyBaseN/AISS
UniRef100_G7JZF1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Agenet and bromo-adjacent homology (BAH) domain-containing protein-like protein n=2 Tax=Medicago truncatula RepID=G7JZF1_MEDTR SoyBaseE_val: 2.00E-36ISS
UniRef100_I1J6L2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J6L2_SOYBN SoyBaseE_val: 5.00E-48ISS

Expression Patterns of Glyma07g29078
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g29078 not represented in the dataset
Glyma07g29078 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma07g29078 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.07g177400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma07g29078
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma07g29078
>Glyma07g29078.1   sequence type=CDS   gene model=Glyma07g29078   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCACAGTTGTACAAAAGAATTCTCATGGATAGGGTTGCCATGGGCGTGTAAGAAAAGAAGAAAGCACTATCAGGCATATAAGAGAAATGGTTTTCAGATATCCTTGAAAGACAAGCATGTTGTTGCCTACTTGGAAGACCTTTATGAGGATTCCAGAGGCAATAAGATGGTTGTGGTGTGCTGGTTTCACAAAATTGATGAGGTTGGTATTGCTTTGCCTCACAGTTTTAGTGACAGAGAGGTTTTCTTTTCTCTTTATCTTTAA
Predicted protein sequences of Glyma07g29078
>Glyma07g29078.1   sequence type=predicted peptide   gene model=Glyma07g29078   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHSCTKEFSWIGLPWACKKRRKHYQAYKRNGFQISLKDKHVVAYLEDLYEDSRGNKMVVVCWFHKIDEVGIALPHSFSDREVFFSLYL*






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