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Report for Sequence Feature Glyma07g28990

Feature Type:gene_model
Chromosome:Gm07
Start:33415632
stop:33424713
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma07g28990
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G02180AT Annotation by Michelle Graham. TAIR10: tobamovirus multiplication protein 3 | chr2:560976-562961 FORWARD LENGTH=303 SoyBaseE_val: 1.00E-174ISS
GO:0046786GO-bp Annotation by Michelle Graham. GO Biological Process: viral replication complex formation and maintenance SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
PF06454PFAM Protein of unknown function (DUF1084) JGI ISS
UniRef100_I1KL09UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KL09_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q9ZUM2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Arabidopsis thaliana RepID=Q9ZUM2_ARATH SoyBaseE_val: 6.00E-172ISS

Expression Patterns of Glyma07g28990
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma07g28990 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.07g177000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma07g28990
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma07g28990
>Glyma07g28990.1   sequence type=CDS   gene model=Glyma07g28990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCAACGACTGTGTGCCGTCGACGGCGGCGGCGGAGGTCATGGCGGTGGTGGCCGTTGAGCTCACTGACGCCTCCAGCTGGTGGCACGACATCGACGACTCTCCGGCGTGGCAGGATCGTATCTTCTACACTCTCGCCGTACTCTACGGTATCGTGGCCACCGTAGCTTTGGTTCAACTGGCTCGGATACATTTGAGAGTGCCGGAGTACGGTTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTTTTGGTGAATGGGGTTCGGTGTGTAGTTTTCATCTTCTTTCGGAATGTGCAGAGGTTGAAGCCAGAGATTGTTCAACACATCTTGCTTGACGTGCCGAGTCTTGCTTTCTTTACAACATATGCACTTTTGGTCCTGTTCTGGGCTGAGATTTATTATCAGGCACGTGCTGTATCAACTGATGGGCTGAAACCAAGTTTCTATACTATTAATATTGTGGTTTACGTTGTTCAGATTACTTTATGGTTAATATTGTGGTGGAAACCTATCAGTGGACTGCTCATTTTGTCTAAGATATTCTTTGCAGGGGTCTCTTTGTTTGCAGCCATTGGCTTTCTTCTCTATGGTGGAAGACTATTCTTAATGCTACAGCGCTTTCCTGTTGAATCCAAAGGGCGACGTAAGAAGCTGCAAGAGGTTGGCTATGTGACAACCATATGTTTTTTATGTTTTCTTGTCAGATGCATTATGATGTGTTTTAATGCATTTGATAAAAATGCGGACCTTGATGTCTTGGATCATCCTATTCTAAACTTCATATATTACCTGGTGGTGGAAATATTGCCTTCTTCTTTGGTCCTTTTCATTTTGAGGAAGCTTCCACCTAAGCGTGGTATCACACAATATCACCCAATTCGCTGA
Predicted protein sequences of Glyma07g28990
>Glyma07g28990.1   sequence type=predicted peptide   gene model=Glyma07g28990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGNDCVPSTAAAEVMAVVAVELTDASSWWHDIDDSPAWQDRIFYTLAVLYGIVATVALVQLARIHLRVPEYGWTTQKVFHFLNFLVNGVRCVVFIFFRNVQRLKPEIVQHILLDVPSLAFFTTYALLVLFWAEIYYQARAVSTDGLKPSFYTINIVVYVVQITLWLILWWKPISGLLILSKIFFAGVSLFAAIGFLLYGGRLFLMLQRFPVESKGRRKKLQEVGYVTTICFLCFLVRCIMMCFNAFDKNADLDVLDHPILNFIYYLVVEILPSSLVLFILRKLPPKRGITQYHPIR*






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