SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G17700 | AT | Annotation by Michelle Graham. TAIR10: cyclic nucleotide-binding transporter 1 | chr3:6049074-6052449 FORWARD LENGTH=764 | SoyBase | E_val: 8.00E-46 | ISS |
| GO:0000165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: MAPK cascade | SoyBase | N/A | ISS |
| GO:0006612 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane | SoyBase | N/A | ISS |
| GO:0006811 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ion transport | SoyBase | N/A | ISS |
| GO:0009595 | GO-bp | Annotation by Michelle Graham. GO Biological Process: detection of biotic stimulus | SoyBase | N/A | ISS |
| GO:0009624 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to nematode | SoyBase | N/A | ISS |
| GO:0009697 | GO-bp | Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0009862 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009867 | GO-bp | Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010200 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to chitin | SoyBase | N/A | ISS |
| GO:0010310 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process | SoyBase | N/A | ISS |
| GO:0010363 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response | SoyBase | N/A | ISS |
| GO:0031348 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response | SoyBase | N/A | ISS |
| GO:0042742 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to bacterium | SoyBase | N/A | ISS |
| GO:0043900 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of multi-organism process | SoyBase | N/A | ISS |
| GO:0050832 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to fungus | SoyBase | N/A | ISS |
| GO:0055085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transmembrane transport | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0005216 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ion channel activity | SoyBase | N/A | ISS |
| GO:0005516 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: calmodulin binding | SoyBase | N/A | ISS |
| GO:0030551 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cyclic nucleotide binding | SoyBase | N/A | ISS |
| PTHR10217 | Panther | VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL | JGI | ISS | |
| PTHR10217:SF7 | Panther | POTASSIUM CHANNEL PROTEIN EAG-RELATED | JGI | ISS | |
| UniRef100_G7K6G2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cyclic nucleotide gated channel n=1 Tax=Medicago truncatula RepID=G7K6G2_MEDTR | SoyBase | E_val: 5.00E-63 | ISS |
| UniRef100_I1KGV2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KGV2_SOYBN | SoyBase | E_val: 2.00E-139 | ISS |
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Glyma07g28850 not represented in the dataset |
Glyma07g28850 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g28850.1 sequence type=CDS gene model=Glyma07g28850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTCATTTTGAAAAAGATGAGGTACCAATGATGTCAGAAACACATGCTCAACTATCTGATGAAGTTGTGGATTCTAATTTCCGAAGGCTTGTATCTAGGACACGAAGTGCTTCAATTTCTATTCCTATGGCCTCCTTGGAATCATATGAGAAAGAAACTAGTCTTGTGGGACATACTGGTCCACTTCATAGTGTGAGAAAAACCCCCTCTGTGCAGATCAGTGGTCCACTGTATGCTACCAATGGAACTGGAAATCTTTCACGACAGAATATAGTTGCAACACGAACCAAAGTAATGGAGAGCAAGACAGAAAAGTTTTCTACTTTCAATGGCACAGATGAAAATCGTATGGGCAACTTGGAGTGTGTAATGATCCTTATTGTACTACTTGCCCCACTTATTTCAAGGCTTCTCAGCCAAGAACCCGAAGAACTTCAGCTATATTTGATCCCAAGGAAACTGATTTCTAGGAGAAGCTTTTGCTTGCTTGTGCCTATACATTATGTTCATTTACTAATTACTATTCTTAATCTTGAATTCTTAATTGGTTATGTTTCTCCTGAGTCAAGGGTAGTAGGTGCTGGAGATTTAGTTGATCATCCCAAGAAAATTGCTCTTAATTATCTGAAGGGTTATTTTTTCATTGACCTATTTGTTGTATTGCCTCTACCTCAGATAATGATATCATTTGTCCTACGAAAGTACTTGGGAATATCCGGAGAAAATTTTGCTAAAAATCTTCTGCGTGCAGCAATCCTTTTGCAGTATTTTCCCAGATTATTCAGGTTTCTGCCTCTGCTAATTGGCCAAAAAATAAACTATGATAGTAGTAGGGTTAATCAATGCTTGCGAAAGGCCTGCCAACATTCTAATATTACTGGATGCTCAGCATTTATTGATTGTGGCAGTGACCGTGCATCTGACCAGTCAAAACTGTGGAACAAAAATGTAAATGCCACTGCTTGTTTGGATTCCAGTTCCGGTGCTTTTCCATATGGGATCTATGTACATGTTGTACCACTTACTATAGAAACTAGGGTGGTCAAAAAATAT
>Glyma07g28850.1 sequence type=predicted peptide gene model=Glyma07g28850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAHFEKDEVPMMSETHAQLSDEVVDSNFRRLVSRTRSASISIPMASLESYEKETSLVGHTGPLHSVRKTPSVQISGPLYATNGTGNLSRQNIVATRTKVMESKTEKFSTFNGTDENRMGNLECVMILIVLLAPLISRLLSQEPEELQLYLIPRKLISRRSFCLLVPIHYVHLLITILNLEFLIGYVSPESRVVGAGDLVDHPKKIALNYLKGYFFIDLFVVLPLPQIMISFVLRKYLGISGENFAKNLLRAAILLQYFPRLFRFLPLLIGQKINYDSSRVNQCLRKACQHSNITGCSAFIDCGSDRASDQSKLWNKNVNATACLDSSSGAFPYGIYVHVVPLTIETRVVKKY
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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