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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G25220 | AT | Annotation by Michelle Graham. TAIR10: anthranilate synthase beta subunit 1 | chr1:8837430-8839478 REVERSE LENGTH=276 | SoyBase | E_val: 4.00E-136 | ISS |
| GO:0000162 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tryptophan biosynthetic process | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0009617 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to bacterium | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0009723 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus | SoyBase | N/A | ISS |
| GO:0009851 | GO-bp | Annotation by Michelle Graham. GO Biological Process: auxin biosynthetic process | SoyBase | N/A | ISS |
| GO:0010311 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lateral root formation | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0004049 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: anthranilate synthase activity | SoyBase | N/A | ISS |
| KOG0026 | KOG | Anthranilate synthase, beta chain | JGI | ISS | |
| PTHR11922 | Panther | GMP SYNTHASE-RELATED | JGI | ISS | |
| PTHR11922:SF7 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00117 | PFAM | Glutamine amidotransferase class-I | JGI | ISS | |
| UniRef100_B9SNH9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Anthranilate synthase component II, putative n=1 Tax=Ricinus communis RepID=B9SNH9_RICCO | SoyBase | E_val: 9.00E-134 | ISS |
| UniRef100_UPI00018CC812 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00018CC812 related cluster n=1 Tax=unknown RepID=UPI00018CC812 | SoyBase | E_val: 1.00E-177 | ISS |
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Glyma07g28020 not represented in the dataset |
Glyma07g28020 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma20g01505 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g175000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g28020.3 sequence type=transcript gene model=Glyma07g28020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GGTCAAGATGCAAGTTCCATTGTTTACATGAGCGCAGAGAATCCCCCTCATCCCAACAACAAAGCGGTGTAAAACGTGTTGGTTACTTTGTGTTGTGCTTGCTTGAGAGACGAAAAAGAGAAACATTTGAACATGGCAGCCACATTCTTCTCTCACTTGTCCCTTCTTCAATCCAATAACAACAACAGCCCTTCTCTCTCTCCCACACCCTCTCGCATTTCTCACTCTCTCACCAACCGTGTCAAACCCTCCCTCTGTGGGGTTTCCGTTGGAAAAAGGGCAAGTGGGTTGGTGCCAAAGGCCACTTTGAATGCCGTGGAGGCCATTTCGGCTAATAAGAAGTCCAACAACAACCCCATTGTTGTTATTGACAACTATGACAGCTTCACCTATAATCTCTGCCAGTATATGGGGGAGTTAGGGTTTCACTTTGAGGTCTACCGCAATGATGAGTTGACAGTGGAGGAGTTGAAAAGGAAAAATCCCAGAGGAGTGCTGATATCACCCGGGCCAGGAGCACCTCAAGATTCGGGCATATCTTTGCAAACAGTTTTGGAGCTTGGACCAACTGTGCCATTGTTTGGTGTGTGCATGGGTTTGCAGTGCATTGGAGAGGCTTTTGGAGGGAAGATTGTTCGTGCTCCTCATGGTGTCATGCATGGAAAAAGCTCAATGGTTTACTATGATGAGAAAGGAGAAGATGGAGTACTTGCTGGACTATCAAATCCTTTCTTGGCTGGTAGATATCACAGCCTTGTAATTGAGAAAGGTAGCTTTCCTGATGATGAACTTGAGGTTACAGCCTGGACAGAAGATGGTCTTATAATGGCTGCTCGTCATAAGAAATATAAGCATCTACAGGGAGTTCAGTTTCATCCCGAGAGCATTATAACCCCTGAAGGCAAGACAATTGTCCATAATTTTGTCAAGCTTATTGAGAGAAGTGAGGCTGTTGGTTCTTGAAACAATGTTTGCTGTGTATAGTTAAAATTGTGGTTTGACACAACAAACTAAAATAAAGAAAGGTATAATGACGCCTTTTGTCAGCCACAGTTTAGAATATCAGAGAAAATCTTGGTAGGGAAGAACCTTGGCATGATATTGATCCATTATTTGATTTCCGTAAGATCTATAAAAGCGAATCTTCAGTATATAATAAAACACACAATGTAGAGTTAGATCTTGCAAATTTAGACTATTTAGGACTCAGATAAAATTTATCTTTTAACAGTGTTATAACAATAGTGTTAGATCTTGTTTGGATAAGTTTTTTCATAGACACTTGAAAAAAATGAATTAAGTTTCTCACATAAAGTTAAAATTAA
>Glyma07g28020.1 sequence type=CDS gene model=Glyma07g28020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGAGCTTTGTATAGAATCTGTTGTTATACATGTACATCTTTAAAAGTGGTTTTTCTAACATTGTATCATTTTTATTTGAAGTATATGGGGGAGTTAGGGTTTCACTTTGAGGTCTACCGCAATGATGAGTTGACAGTGGAGGAGTTGAAAAGGAAAAATCCCAGAGGAGTGCTGATATCACCCGGGCCAGGAGCACCTCAAGATTCGGGCATATCTTTGCAAACAGTTTTGGAGCTTGGACCAACTGTGCCATTGTTTGGTGTGTGCATGGGTTTGCAGTGCATTGGAGAGGCTTTTGGAGGGAAGATTGTTCGTGCTCCTCATGGTGTCATGCATGGAAAAAGCTCAATGGTTTACTATGATGAGAAAGGAGAAGATGGAGTACTTGCTGGACTATCAAATCCTTTCTTGGCTGGTAGATATCACAGCCTTGTAATTGAGAAAGGTAGCTTTCCTGATGATGAACTTGAGGTTACAGCCTGGACAGAAGATGGTCTTATAATGGCTGCTCGTCATAAGAAATATAAGCATCTACAGGGAGTTCAGTTTCATCCCGAGAGCATTATAACCCCTGAAGGCAAGACAATTGTCCATAATTTTGTCAAGCTTATTGAGAGAAGTGAGGCTGTTGGTTCTTGA >Glyma07g28020.3 sequence type=CDS gene model=Glyma07g28020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAGCCACATTCTTCTCTCACTTGTCCCTTCTTCAATCCAATAACAACAACAGCCCTTCTCTCTCTCCCACACCCTCTCGCATTTCTCACTCTCTCACCAACCGTGTCAAACCCTCCCTCTGTGGGGTTTCCGTTGGAAAAAGGGCAAGTGGGTTGGTGCCAAAGGCCACTTTGAATGCCGTGGAGGCCATTTCGGCTAATAAGAAGTCCAACAACAACCCCATTGTTGTTATTGACAACTATGACAGCTTCACCTATAATCTCTGCCAGTATATGGGGGAGTTAGGGTTTCACTTTGAGGTCTACCGCAATGATGAGTTGACAGTGGAGGAGTTGAAAAGGAAAAATCCCAGAGGAGTGCTGATATCACCCGGGCCAGGAGCACCTCAAGATTCGGGCATATCTTTGCAAACAGTTTTGGAGCTTGGACCAACTGTGCCATTGTTTGGTGTGTGCATGGGTTTGCAGTGCATTGGAGAGGCTTTTGGAGGGAAGATTGTTCGTGCTCCTCATGGTGTCATGCATGGAAAAAGCTCAATGGTTTACTATGATGAGAAAGGAGAAGATGGAGTACTTGCTGGACTATCAAATCCTTTCTTGGCTGGTAGATATCACAGCCTTGTAATTGAGAAAGGTAGCTTTCCTGATGATGAACTTGAGGTTACAGCCTGGACAGAAGATGGTCTTATAATGGCTGCTCGTCATAAGAAATATAAGCATCTACAGGGAGTTCAGTTTCATCCCGAGAGCATTATAACCCCTGAAGGCAAGACAATTGTCCATAATTTTGTCAAGCTTATTGAGAGAAGTGAGGCTGTTGGTTCTTGA
>Glyma07g28020.1 sequence type=predicted peptide gene model=Glyma07g28020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRALYRICCYTCTSLKVVFLTLYHFYLKYMGELGFHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRAPHGVMHGKSSMVYYDEKGEDGVLAGLSNPFLAGRYHSLVIEKGSFPDDELEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITPEGKTIVHNFVKLIERSEAVGS* >Glyma07g28020.3 sequence type=predicted peptide gene model=Glyma07g28020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAATFFSHLSLLQSNNNNSPSLSPTPSRISHSLTNRVKPSLCGVSVGKRASGLVPKATLNAVEAISANKKSNNNPIVVIDNYDSFTYNLCQYMGELGFHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRAPHGVMHGKSSMVYYDEKGEDGVLAGLSNPFLAGRYHSLVIEKGSFPDDELEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITPEGKTIVHNFVKLIERSEAVGS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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