Glyma07g27990 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma07g27990

Feature Type:	gene_model
Chromosome:	Gm07
Start:	31628342
stop:	31631693
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g27990

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G14720	AT	Annotation by Michelle Graham. TAIR10: xyloglucan endotransglucosylase/hydrolase 28 \| chr1:5066806-5068466 REVERSE LENGTH=332	SoyBase	E_val: 4.00E-159	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0006073	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular glucan metabolic process	SoyBase	N/A	ISS
GO:0010154	GO-bp	Annotation by Michelle Graham. GO Biological Process: fruit development	SoyBase	N/A	ISS
GO:0080086	GO-bp	Annotation by Michelle Graham. GO Biological Process: stamen filament development	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0048046	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: apoplast	SoyBase	N/A	ISS
GO:0004553	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds	SoyBase	N/A	ISS
GO:0016762	GO-mf	Annotation by Michelle Graham. GO Molecular Function: xyloglucan:xyloglucosyl transferase activity	SoyBase	N/A	ISS
GO:0016798	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on glycosyl bonds	SoyBase	N/A	ISS
PF00722	PFAM	Glycosyl hydrolases family 16	JGI		ISS
PF06955	PFAM	Xyloglucan endo-transglycosylase (XET) C-terminus	JGI		ISS
UniRef100_A2TEJ2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Xyloglucan endotransglycosylase/hydrolase XTH-39 n=1 Tax=Populus tremula RepID=A2TEJ2_POPTN	SoyBase	E_val: 8.00E-180	ISS
UniRef100_I1KKZ1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KKZ1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g27990

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g27990

Paralog	Evidence	Comments
Glyma20g01520	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g27990 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g174800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g27990

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g27990

Limit To All Plant Sequences

>Glyma07g27990.1   sequence type=CDS   gene model=Glyma07g27990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGGGGGTCACATGGGGTGGTTCCTCTTCTGTTGTTGTTTTTCTCTACTTTTTTTTCATTCTTCTGGGTCACCCAGAAGAAACTTGCCCATCATAGCCTTTGAGGATGGCTACACCCCCTTGTTTGGGGACCATAATTTGGCCATCCATAGAGATGGCAAATCAGTTCACCTTTCACTTGATGAAAGAACAGGTTCTGGATTTGTGTCTCATGACCTTTACCTTCACGGGTATTTCAGTGCCTCGATCAAGCTGCCTGCTGATTACACTGCTGGAGTTGTGGTTGCATTTTATATGTCAAATGGTGAAATGTTCCAGAACAACCATGATGAGATAGACTTTGAGTTTTTGGGGAACATTAGAGGCAAAGACTGGAGGATTCAGACAAATGTTTATGGCAATGGAAGCACCAGCATTGGTAGAGAGGAAAGATATGGCTTATGGTTTGATCCTGCTGAGGATTTCCATCAGTACAGTATTCTTTGGACAGATTCTAAGATCATATTTTATGTGGATAATGTTCCTATTAGGGAAGTTAAAAGAACAGAATCTATGGGAGGAGATTTCCCCTCAAAGCCAATGACCATGTATGCTACCATATGGGATGCATCTGATTGGGCAACCAATGGAGGCAAATACAGGGTAAATTACAAGTATGCACCCTATGTTGCTGAGTTCTCTGACCTGATCCTGCATGGTTGTGCAGTTGATCCCATAGAGCATGTGGCCAAGTGTGAAAGTGCCCAAGGTTCTGAGAAAGTTCCCTCTGGTGTCACCCCAGTACAAATAACCAAAATGAGAAACTTCAGGTTGAAGCACATGGCTTACTCTTACTGCTATGACACAGTTAGATACAAAGTCCCTCCACCAGAGTGTGTCATCAACCACCAAGAAGCTGAAAGGCTTAGAAAATTTGATCCCGTCACTTTCGGCAACGGCCAGCGCCACCGTGGGAAACGACACCACCATAGTAGTAAAGGAAGCCAGGAAGAGATTACTGCTTCTTCATTTTAA

Predicted protein sequences of Glyma07g27990

Limit To All Plant Sequences

>Glyma07g27990.1   sequence type=predicted peptide   gene model=Glyma07g27990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGGHMGWFLFCCCFSLLFFHSSGSPRRNLPIIAFEDGYTPLFGDHNLAIHRDGKSVHLSLDERTGSGFVSHDLYLHGYFSASIKLPADYTAGVVVAFYMSNGEMFQNNHDEIDFEFLGNIRGKDWRIQTNVYGNGSTSIGREERYGLWFDPAEDFHQYSILWTDSKIIFYVDNVPIREVKRTESMGGDFPSKPMTMYATIWDASDWATNGGKYRVNYKYAPYVAEFSDLILHGCAVDPIEHVAKCESAQGSEKVPSGVTPVQITKMRNFRLKHMAYSYCYDTVRYKVPPPECVINHQEAERLRKFDPVTFGNGQRHRGKRHHHSSKGSQEEITASSF*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain