Glyma07g27820 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma07g27820

Feature Type:	gene_model
Chromosome:	Gm07
Start:	31342459
stop:	31348117
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g27820

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G24625	AT	Annotation by Michelle Graham. TAIR10: zinc finger protein 7 \| chr1:8726009-8726638 REVERSE LENGTH=209	SoyBase	E_val: 2.00E-38	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
GO:0046982	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein heterodimerization activity	SoyBase	N/A	ISS
PTHR10042	Panther	EARLY GROWTH RESPONSE PROTEIN	JGI		ISS
PTHR10042:SF14	Panther	ZFP4 (ZINC FINGER PROTEIN 4), NUCLEIC ACID BINDING	JGI		ISS
UniRef100_D9ZIT1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: C2H2L domain class transcription factor n=1 Tax=Malus x domestica RepID=D9ZIT1_MALDO	SoyBase	E_val: 2.00E-78	ISS
UniRef100_I1KKY7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KKY7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g27820

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g27820

Paralog	Evidence	Comments
Glyma20g01560	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g27820 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g174000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g27820

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g27820

Limit To All Plant Sequences

>Glyma07g27820.1   sequence type=CDS   gene model=Glyma07g27820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGACTCCAAACTTGAATCTGGAACCAGAAGGTGGTTTAAAAGTCCTCAGCCAAGTAGGTTTCGATAAATCAATACAAGAGACATCTCATGATCTTACCAAGGACAGCACTGCTACTTCCTCCTGTCTTACCAAGGCTGATCCTGACCCAGGTTCTGTTTCCCTTGACTTGTCCCTCAACTTCAATCCCAATGATGAAGAGTTGAAAGGCACAAGTGATACTAACTGTGAAGTAGGACCTGAAACACATGCCTCAGCATCAGCAATTCCTAGAGTTTTCTCTTGTAATTATTGTCAGCGGAAATTCTTTAGCTCGCAGGCATTAGGTGGCCACCAGAATGCTCATAAAAGGGAGAGGACAATGGCGAAGCGTGCAATGCGAATGGGGATGTTCGCTGAAAGGTACACAAGCCTAGCATCTCTGCCTCTCCATGGTTCTGCTTTTCGGTCGCTTGGACTCGAAGCTCATGCTGCAATGCACCAAGGGCATGTGCATCATTCAATGAGGGCTCCTGATATGAGTGCTGCAGCGAAATTCGGGAAAGACTATTTTCGGACACCGATCTTCGTGGAAGATGATGATGTTGGTCTGTTTTGGCCTGGAAGTTTCAGACAGATTGATGAAAGGGGTTATGTTAATTTGAGGCATGGTGAGCATGCTCATAATTCAAATACTAGTTTTGTAGTAGCAACTGCACCTCAAGCACAAACATCTGTGTCTCCTGATCTCACTCTGAGGCTTTGA

Predicted protein sequences of Glyma07g27820

Limit To All Plant Sequences

>Glyma07g27820.1   sequence type=predicted peptide   gene model=Glyma07g27820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMTPNLNLEPEGGLKVLSQVGFDKSIQETSHDLTKDSTATSSCLTKADPDPGSVSLDLSLNFNPNDEELKGTSDTNCEVGPETHASASAIPRVFSCNYCQRKFFSSQALGGHQNAHKRERTMAKRAMRMGMFAERYTSLASLPLHGSAFRSLGLEAHAAMHQGHVHHSMRAPDMSAAAKFGKDYFRTPIFVEDDDVGLFWPGSFRQIDERGYVNLRHGEHAHNSNTSFVVATAPQAQTSVSPDLTLRL*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain