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Report for Sequence Feature Glyma07g27590

Feature Type:gene_model
Chromosome:Gm07
Start:30942676
stop:30949523
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma07g27590
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G30960AT Annotation by Michelle Graham. TAIR10: GTP-binding family protein | chr1:11037755-11039977 REVERSE LENGTH=437 SoyBaseE_val: 3.00E-180ISS
GO:0006897GO-bp Annotation by Michelle Graham. GO Biological Process: endocytosis SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003723GO-mf Annotation by Michelle Graham. GO Molecular Function: RNA binding SoyBaseN/AISS
GO:0005525GO-mf Annotation by Michelle Graham. GO Molecular Function: GTP binding SoyBaseN/AISS
KOG1423 KOG Ras-like GTPase ERA JGI ISS
PTHR11649Panther MSS1/TRME-RELATED GTP-BINDING PROTEIN JGI ISS
PTHR11649:SF39Panther GTP-BINDING PROTEIN (ERG) JGI ISS
PF01926PFAM GTPase of unknown function JGI ISS
UniRef100_G7KDM7UniRef Annotation by Michelle Graham. Most informative UniRef hit: GTP-binding protein ERG n=1 Tax=Medicago truncatula RepID=G7KDM7_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI0002337BE4UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002337BE4 related cluster n=1 Tax=unknown RepID=UPI0002337BE4 SoyBaseE_val: 0ISS

Expression Patterns of Glyma07g27590
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma07g27590 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.07g173800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma07g27590
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma07g27590
>Glyma07g27590.1   sequence type=CDS   gene model=Glyma07g27590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAGCTCTGAGAACCCTAAGAAGAACCCTCTATTCCCCAACACCCGCAACCGTTTTTCGCGCCTTCTTCTCCGCACAACCACAGCCGCACCACGATGACCCCACCGACTCCTCCGTCTTCGATAGTTCCCACTACGCCCTTGAGGCCGAGCCCACGCTCAAGCCCGAGCCAAAGCCCACGTGGGACGAGAAGTACCGGGCCAGGGCGGACCGGGTGGTGTTCGGGGAAGAGGGCCCCAAGGGGAAGCTGCGGGTGAAGGAGGAGGAGGATGAGAGGCGGAGAAGGGCCCTCGCGAAGGCCCTTCTCGAAGCTGCGATGGACGAGGGCGAAGACGAAGAGGAGGAAGGGAAAGGAGCGGGCTTGGTGAAGGAGGACGACCAGAAGTCGCTGTCCGTGGGAATCATTGGCGCCCCCAATGCTGGCAAGTCTGCGCTGACTAATTACATGGTTGGGACGAAGGTGGCAGCAGTTTCTCGGAAGACGAATACTACAACTCATGAAGTTGTGGGAGTGTTAACTAAAGGAGACACCCAAATTTGTTTTTTTGATACACCAGGGCTCATGTTGAATTGCGGTGGATTTCCTTATAGGGATGTCAAGGTCCGTGTTGAAAGTGCTTGGAGTTCAGTCAATCTCTATGAAGTGCTCATAGTCATTTTTGACGTTCATAGACATATTACCAGGCCTGATTCAAGAGTGATACAATTAATTAAACGAATGGGAGCTCGATCGATTCCAAATCAAAGGAGAATTTTGTGCATGAACAAGATTGATCTAGTAGAGAAAAAGAAAGACTTATTGAAGGTTGCCGAAGAATTCAAAGATCTTCCTGGATATGAAAGGTATTTCATGATATCAGGACTGAAGGGGTCTGGAGTAAAAGATCTGACTCAGTACTTGATGGAGCAGGCAGTTCAACGACCCTGGGAAGAAGATCCATTTACCATGAGTGAGGAAGTTATGAAGATGATAGCATTAGAAGTTGTGCGTGAAAGGTTATTGGACCATGTACATCAGGAAATTCCGTATGATGTTGAACATCGATTGATTGACTGGAAAGAGTTACGAGATGGTTCTCTTAGAATTGAGCAACACTTCATCACTAACAAATTAAGCCAATGCAAGATTCTTGTGGGGAAGAATGGCTCAAAAATTGGGAGAATAGGAATTGAAGCCAATGAAGAGCTAAGGTCCATTTTCAAAAAGCAAGTGCATCTAATTCTCCGAGTTAGGCATAAAAAGTGA
Predicted protein sequences of Glyma07g27590
>Glyma07g27590.1   sequence type=predicted peptide   gene model=Glyma07g27590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKALRTLRRTLYSPTPATVFRAFFSAQPQPHHDDPTDSSVFDSSHYALEAEPTLKPEPKPTWDEKYRARADRVVFGEEGPKGKLRVKEEEDERRRRALAKALLEAAMDEGEDEEEEGKGAGLVKEDDQKSLSVGIIGAPNAGKSALTNYMVGTKVAAVSRKTNTTTHEVVGVLTKGDTQICFFDTPGLMLNCGGFPYRDVKVRVESAWSSVNLYEVLIVIFDVHRHITRPDSRVIQLIKRMGARSIPNQRRILCMNKIDLVEKKKDLLKVAEEFKDLPGYERYFMISGLKGSGVKDLTQYLMEQAVQRPWEEDPFTMSEEVMKMIALEVVRERLLDHVHQEIPYDVEHRLIDWKELRDGSLRIEQHFITNKLSQCKILVGKNGSKIGRIGIEANEELRSIFKKQVHLILRVRHKK*






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