SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G30960 | AT | Annotation by Michelle Graham. TAIR10: GTP-binding family protein | chr1:11037755-11039977 REVERSE LENGTH=437 | SoyBase | E_val: 3.00E-180 | ISS |
| GO:0006897 | GO-bp | Annotation by Michelle Graham. GO Biological Process: endocytosis | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| GO:0005525 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTP binding | SoyBase | N/A | ISS |
| KOG1423 | KOG | Ras-like GTPase ERA | JGI | ISS | |
| PTHR11649 | Panther | MSS1/TRME-RELATED GTP-BINDING PROTEIN | JGI | ISS | |
| PTHR11649:SF39 | Panther | GTP-BINDING PROTEIN (ERG) | JGI | ISS | |
| PF01926 | PFAM | GTPase of unknown function | JGI | ISS | |
| UniRef100_G7KDM7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: GTP-binding protein ERG n=1 Tax=Medicago truncatula RepID=G7KDM7_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002337BE4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002337BE4 related cluster n=1 Tax=unknown RepID=UPI0002337BE4 | SoyBase | E_val: 0 | ISS |
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Glyma07g27590 not represented in the dataset |
Glyma07g27590 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g173800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g27590.1 sequence type=CDS gene model=Glyma07g27590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAAGCTCTGAGAACCCTAAGAAGAACCCTCTATTCCCCAACACCCGCAACCGTTTTTCGCGCCTTCTTCTCCGCACAACCACAGCCGCACCACGATGACCCCACCGACTCCTCCGTCTTCGATAGTTCCCACTACGCCCTTGAGGCCGAGCCCACGCTCAAGCCCGAGCCAAAGCCCACGTGGGACGAGAAGTACCGGGCCAGGGCGGACCGGGTGGTGTTCGGGGAAGAGGGCCCCAAGGGGAAGCTGCGGGTGAAGGAGGAGGAGGATGAGAGGCGGAGAAGGGCCCTCGCGAAGGCCCTTCTCGAAGCTGCGATGGACGAGGGCGAAGACGAAGAGGAGGAAGGGAAAGGAGCGGGCTTGGTGAAGGAGGACGACCAGAAGTCGCTGTCCGTGGGAATCATTGGCGCCCCCAATGCTGGCAAGTCTGCGCTGACTAATTACATGGTTGGGACGAAGGTGGCAGCAGTTTCTCGGAAGACGAATACTACAACTCATGAAGTTGTGGGAGTGTTAACTAAAGGAGACACCCAAATTTGTTTTTTTGATACACCAGGGCTCATGTTGAATTGCGGTGGATTTCCTTATAGGGATGTCAAGGTCCGTGTTGAAAGTGCTTGGAGTTCAGTCAATCTCTATGAAGTGCTCATAGTCATTTTTGACGTTCATAGACATATTACCAGGCCTGATTCAAGAGTGATACAATTAATTAAACGAATGGGAGCTCGATCGATTCCAAATCAAAGGAGAATTTTGTGCATGAACAAGATTGATCTAGTAGAGAAAAAGAAAGACTTATTGAAGGTTGCCGAAGAATTCAAAGATCTTCCTGGATATGAAAGGTATTTCATGATATCAGGACTGAAGGGGTCTGGAGTAAAAGATCTGACTCAGTACTTGATGGAGCAGGCAGTTCAACGACCCTGGGAAGAAGATCCATTTACCATGAGTGAGGAAGTTATGAAGATGATAGCATTAGAAGTTGTGCGTGAAAGGTTATTGGACCATGTACATCAGGAAATTCCGTATGATGTTGAACATCGATTGATTGACTGGAAAGAGTTACGAGATGGTTCTCTTAGAATTGAGCAACACTTCATCACTAACAAATTAAGCCAATGCAAGATTCTTGTGGGGAAGAATGGCTCAAAAATTGGGAGAATAGGAATTGAAGCCAATGAAGAGCTAAGGTCCATTTTCAAAAAGCAAGTGCATCTAATTCTCCGAGTTAGGCATAAAAAGTGA
>Glyma07g27590.1 sequence type=predicted peptide gene model=Glyma07g27590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKALRTLRRTLYSPTPATVFRAFFSAQPQPHHDDPTDSSVFDSSHYALEAEPTLKPEPKPTWDEKYRARADRVVFGEEGPKGKLRVKEEEDERRRRALAKALLEAAMDEGEDEEEEGKGAGLVKEDDQKSLSVGIIGAPNAGKSALTNYMVGTKVAAVSRKTNTTTHEVVGVLTKGDTQICFFDTPGLMLNCGGFPYRDVKVRVESAWSSVNLYEVLIVIFDVHRHITRPDSRVIQLIKRMGARSIPNQRRILCMNKIDLVEKKKDLLKVAEEFKDLPGYERYFMISGLKGSGVKDLTQYLMEQAVQRPWEEDPFTMSEEVMKMIALEVVRERLLDHVHQEIPYDVEHRLIDWKELRDGSLRIEQHFITNKLSQCKILVGKNGSKIGRIGIEANEELRSIFKKQVHLILRVRHKK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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