SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G24130 | AT | Annotation by Michelle Graham. TAIR10: Pectin lyase-like superfamily protein | chr3:8711663-8713361 REVERSE LENGTH=335 | SoyBase | E_val: 8.00E-123 | ISS |
| GO:0042545 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall modification | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0005618 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cell wall | SoyBase | N/A | ISS |
| GO:0009505 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall | SoyBase | N/A | ISS |
| GO:0030599 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: pectinesterase activity | SoyBase | N/A | ISS |
| PF01095 | PFAM | Pectinesterase | JGI | ISS | |
| UniRef100_B9RWI7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Pectinesterase n=1 Tax=Ricinus communis RepID=B9RWI7_RICCO | SoyBase | E_val: 4.00E-134 | ISS |
| UniRef100_UPI0002337BE2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002337BE2 related cluster n=1 Tax=unknown RepID=UPI0002337BE2 | SoyBase | E_val: 0 | ISS |
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Glyma07g27450 not represented in the dataset |
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| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g173500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g27450.2 sequence type=CDS gene model=Glyma07g27450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAACATAATTCCTTGAAACAAACATTTCCTTGGAAGAAGATGATGTGGACAATTATTGTGGACCGATTGGGGAATGGACACTTCTCTACGATACAATCTGCCATTGATTCAGTCGCTTCCTACAACAAGAATTGGGTTTATATCTATGTGATGGCAGGCACCTACAGGGAAAAGGTGAAGATCACTTCTGACAAGCCTTTCATCGTACTAAAAGGAGAGGGACAAAAGAACACTTTTGTTGAGTGGCATGACCATGATTCAAGTGCAGAGAGTCCTACGTTCACAACCATGGCCGACAATGTCGTCGTCAAGTCCATTAGCTTTAGGAATACATACAATAATAACAGAAATGCTAACTCAATGGAAGCTGCGGTAGCTGCAATGATATTTGGCGACAGGTCGTACTTCTATGACGTTGGCTTCTTTGGTTTGCAAGACACTTTGTGGGATGGACAAGGAAGACATTACTTCAAGTCTTGTACAATTCAAGGTGCTATGGATTTTATCTTCGGCACTGGCCAATCTTTATATGAGGACTGTACCATATCCGCTATTGGTGCTAATCTTGGTCCTGGCATTATTGGTTTTATCACGGCACAAGGGAGAACAAATCCAAACGATGCAAATGGGTTTGTTTTTAAGCATTGCAATATCGTTGGAAATGGTACAACTTACTTGGGAAGACCATGGAGAGGTTATGCTAGAGTTCTTTTCTATGATACTAAAATCTCTAACATTATCCAACCATTAGGTTGGCAGCCATGGGATTTCGCTGGGCACGAGGATCACATAACATTCGCAGAGTATGGCAATTCTGGACCTGGTTCTGACACTTCCAAGCGAGTAAGTTGGTTAAAGAAATTGGATTCATCAACAGTTAGCAAGTTGGCAACTACTAGCTTCATTGACACCGAAGGTTGGCTAAATACACTGACGCAGCTCTAA
>Glyma07g27450.2 sequence type=predicted peptide gene model=Glyma07g27450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQHNSLKQTFPWKKMMWTIIVDRLGNGHFSTIQSAIDSVASYNKNWVYIYVMAGTYREKVKITSDKPFIVLKGEGQKNTFVEWHDHDSSAESPTFTTMADNVVVKSISFRNTYNNNRNANSMEAAVAAMIFGDRSYFYDVGFFGLQDTLWDGQGRHYFKSCTIQGAMDFIFGTGQSLYEDCTISAIGANLGPGIIGFITAQGRTNPNDANGFVFKHCNIVGNGTTYLGRPWRGYARVLFYDTKISNIIQPLGWQPWDFAGHEDHITFAEYGNSGPGSDTSKRVSWLKKLDSSTVSKLATTSFIDTEGWLNTLTQL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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