SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G01818 | AT | Annotation by Michelle Graham. TAIR10: PLATZ transcription factor family protein | chr2:353552-355370 REVERSE LENGTH=222 | SoyBase | E_val: 2.00E-36 | ISS |
| PF04640 | PFAM | PLATZ transcription factor | JGI | ISS | |
| UniRef100_D7LPW1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Zinc ion binding protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LPW1_ARALL | SoyBase | E_val: 7.00E-37 | ISS |
| UniRef100_I1KKX6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KKX6_SOYBN | SoyBase | E_val: 5.00E-167 | ISS |
|
Glyma07g27310 not represented in the dataset |
Glyma07g27310 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g172800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g27310.2 sequence type=transcript gene model=Glyma07g27310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GCCGCGTTTTGATAATTCCCATTTTGCCTTTGGGTCCCGCGTACATCCAATTGAAAAATCCTACGGCGGTGTCCATAATCATACACATTACTCATTAGTCATTACTCTTTTCAATTTGAAAATATTTGTTTCCATTTGCACTTTATCTTTCCTTTTTTATTTTAACCCTTTTTTTTTTTCGTTAGTGAGATTTTCACTATCATATATTTTGGTCTTCTTTATAGAGCTACAATAAGTTTTTTCAATATCTGTTTCTTTAACATTTAATCTTCTTTCCCTTTCAATTTCTTGCTGAGAGAGAGAGAAAGAACTGACATGGTTAGTACATAGAATTCTTGTTTTTTGGAATCTGAAATTTCAAAGCTTCTAACTAGTTTTGCTCCCTTCTCTTTTTATTTCTTGTGATATTGTGAATCCAATTTCAAGATTATTGTTTGTTGATCCACAGCCTCATCGCATTCCTAAATTTTCAGTGCATTCTTGGTGCATGTGATTGTTGAAGCAATTCAAACTAGCCCAGTTTTTATCTCTAGAATGGGGCAGAATCGTTTTCCAGAAGAAAGGAAAAGAGATTGGCTTGGTGCCCTTTTGAAGTGCGGCTTTGGATGTTGTGAAGAACACAAAGACATTAGGTTTAATGAGAAGAATGTGTTCTGCATAGATTGCGTAGCTGGCTTGTGTAGGCACTGCAAGGAAGCTCATTCTCTCCATAGAAGGTTTCAGATATACAAATATTCCTATCAGGATGTTGTGCGCCATTATGATCTTCAGAAGTATTTTGATTGCTCAAATATTCAGACTTATGTGTCCAACAATGAAAAGATTGTGCATCTCAGACCCCGGACTTCAACCAAAGAATTCAAGCTAACAAGAAAATCCAAGTTTGATAATCTTTGCTCTGAGTCTAATGCCAAAGAAGTCAAAGTAGCAACACCTCCAAAGTGGGGTGGTACTTGTGAAGAATGTGGAAAGCATTTACAAGATGAGCGCAATCGATTCTGCTCCATTACATGCAAGATCTCAGTGCTTCCTCACCATGCACAAAGGATTCCAGAGGAGGGTGTTGACCAACATGATAACCAAAACTCCGAAACTGAGTCATCTATATCTGTAGCTGAGCCATATGAATGTTTTGAAGTAGTGACTTTAAGAAAGCGCCCAAGGAAAGCCAACCCTCAGAAAACATGTTATTTTGTCTTCCCTTGTTGAAAATTTGTCCTTAGTTTTGCTTACAGTTCTATTTTTGCTTTACATTTTTGGAGAATAAGAAATTTTGGAACATTTGAGGAACCTCAACTCAACCCCTCTGTATCCCATTTTGTGGTTCAAAGTTGGGAATTCAGGAGCTTTGGAACTTGCTGAGATTGTACGGCGCACAGGGTTGATATTAAAATTAAAGATGTATAGGATGTACTTTGGTTACTTTTGAATTCCATCCTTTTCAGCTCTAATAGTGAACTGGAAATTAGTATCCCTTAGTTAAATGATGCTTTTCAAACAAAATTATTTATGGTGATTATGCAAACTTACAAGTTACAATATGCATACGAAACTTAAACCATCTGATATTCATCCAATAA
>Glyma07g27310.1 sequence type=CDS gene model=Glyma07g27310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGGGGCAGAATCGTTTTCCAGAAGAAAGGAAAAGAGATTGGCTTGGTGCCCTTTTGAAGTGCGGCTTTGGATGTTGTGAAGAACACAAAGACATTAGGTTTAATGAGAAGAATGTGTTCTGCATAGATTGCGTAGCTGGCTTGTGTAGGCACTGCAAGGAAGCTCATTCTCTCCATAGAAGGTTTCAGATATACAAATATTCCTATCAGGATGTTGTGCGCCATTATGATCTTCAGAAGTATTTTGATTGCTCAAATATTCAGACTTATGTGTCCAACAATGAAAAGATTGTGCATCTCAGACCCCGGACTTCAACCAAAGAATTCAAGCTAACAAGAAAATCCAAGTTTGATAATCTTTGCTCTGAGTCTAATGCCAAAGAAGTCAAAGTAGCAACACCTCCAAAGTGGGGTGGTACTTGTGAAGAATGTGGAAAGCATTTACAAGATGAGCGCAATCGATTCTGCTCCATTACATGCAAGATCTCAGTGCTTCCTCACCATGCACAAAGGATTCCAGAGGAGGGTGTTGACCAACATGATAACCAAAACTCCGAAACTGAGTCATCTATATCTGTAGCTGAGCCATATGAATGTTTTGAAGTAGTGACTTTAAGAAAGCGCCCAAGGAAAGCCAACCCTCAGAAAACATGTTATTTTGTCTTCCCTTGTTGA >Glyma07g27310.2 sequence type=CDS gene model=Glyma07g27310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGCAGAATCGTTTTCCAGAAGAAAGGAAAAGAGATTGGCTTGGTGCCCTTTTGAAGTGCGGCTTTGGATGTTGTGAAGAACACAAAGACATTAGGTTTAATGAGAAGAATGTGTTCTGCATAGATTGCGTAGCTGGCTTGTGTAGGCACTGCAAGGAAGCTCATTCTCTCCATAGAAGGTTTCAGATATACAAATATTCCTATCAGGATGTTGTGCGCCATTATGATCTTCAGAAGTATTTTGATTGCTCAAATATTCAGACTTATGTGTCCAACAATGAAAAGATTGTGCATCTCAGACCCCGGACTTCAACCAAAGAATTCAAGCTAACAAGAAAATCCAAGTTTGATAATCTTTGCTCTGAGTCTAATGCCAAAGAAGTCAAAGTAGCAACACCTCCAAAGTGGGGTGGTACTTGTGAAGAATGTGGAAAGCATTTACAAGATGAGCGCAATCGATTCTGCTCCATTACATGCAAGATCTCAGTGCTTCCTCACCATGCACAAAGGATTCCAGAGGAGGGTGTTGACCAACATGATAACCAAAACTCCGAAACTGAGTCATCTATATCTGTAGCTGAGCCATATGAATGTTTTGAAGTAGTGACTTTAAGAAAGCGCCCAAGGAAAGCCAACCCTCAGAAAACATGTTATTTTGTCTTCCCTTGTTGA
>Glyma07g27310.1 sequence type=predicted peptide gene model=Glyma07g27310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMGQNRFPEERKRDWLGALLKCGFGCCEEHKDIRFNEKNVFCIDCVAGLCRHCKEAHSLHRRFQIYKYSYQDVVRHYDLQKYFDCSNIQTYVSNNEKIVHLRPRTSTKEFKLTRKSKFDNLCSESNAKEVKVATPPKWGGTCEECGKHLQDERNRFCSITCKISVLPHHAQRIPEEGVDQHDNQNSETESSISVAEPYECFEVVTLRKRPRKANPQKTCYFVFPC* >Glyma07g27310.2 sequence type=predicted peptide gene model=Glyma07g27310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGQNRFPEERKRDWLGALLKCGFGCCEEHKDIRFNEKNVFCIDCVAGLCRHCKEAHSLHRRFQIYKYSYQDVVRHYDLQKYFDCSNIQTYVSNNEKIVHLRPRTSTKEFKLTRKSKFDNLCSESNAKEVKVATPPKWGGTCEECGKHLQDERNRFCSITCKISVLPHHAQRIPEEGVDQHDNQNSETESSISVAEPYECFEVVTLRKRPRKANPQKTCYFVFPC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
