SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G14790 | AT | Annotation by Michelle Graham. TAIR10: RNA-dependent RNA polymerase 1 | chr1:5094317-5097817 REVERSE LENGTH=1107 | SoyBase | E_val: 0 | ISS |
| GO:0000165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: MAPK cascade | SoyBase | N/A | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0006612 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane | SoyBase | N/A | ISS |
| GO:0009615 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to virus | SoyBase | N/A | ISS |
| GO:0009617 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to bacterium | SoyBase | N/A | ISS |
| GO:0009751 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salicylic acid stimulus | SoyBase | N/A | ISS |
| GO:0009862 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009867 | GO-bp | Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010025 | GO-bp | Annotation by Michelle Graham. GO Biological Process: wax biosynthetic process | SoyBase | N/A | ISS |
| GO:0010310 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process | SoyBase | N/A | ISS |
| GO:0010363 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response | SoyBase | N/A | ISS |
| GO:0016441 | GO-bp | Annotation by Michelle Graham. GO Biological Process: posttranscriptional gene silencing | SoyBase | N/A | ISS |
| GO:0031348 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response | SoyBase | N/A | ISS |
| GO:0035304 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of protein dephosphorylation | SoyBase | N/A | ISS |
| GO:0060148 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of posttranscriptional gene silencing | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0003968 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA-directed RNA polymerase activity | SoyBase | N/A | ISS |
| KOG0988 | KOG | RNA-directed RNA polymerase QDE-1 required for posttranscriptional gene silencing and RNA interference | JGI | ISS | |
| PTHR23079 | Panther | RNA-DEPENDENT RNA POLYMERASE | JGI | ISS | |
| PF05183 | PFAM | RNA dependent RNA polymerase | JGI | ISS | |
| UniRef100_B9HJH7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Rna-dependent RNA polymerase n=1 Tax=Populus trichocarpa RepID=B9HJH7_POPTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002337BDD | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002337BDD related cluster n=1 Tax=unknown RepID=UPI0002337BDD | SoyBase | E_val: 0 | ISS |
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Glyma07g26900 not represented in the dataset |
Glyma07g26900 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g09470 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g171400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g26900.1 sequence type=CDS gene model=Glyma07g26900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCCAAGACAATTCAAATGCATGGATTCCAATCTAATGTGTCAGCTGAAGAGGTGAAGAAATTTTTGGAGAAACATACAGGCCACCAAACTGTTCATGCTGTAGAGGTTTGGCAGCATAAAGGAGATCCTACAACACATGTTGATGTTCAATTCACAGACAGAAAAAGTGTTGAAACAATCTTGCTCTTAGTTACTCAGCACCTATCTTACAGTGACTATGTTCTAAATGCTACTGAAATAAATCATGACATTTTTCCAAAGCCAAGGAACTTTCCTCACAGAATGGATGATATAGTAGTGCACTTTGGATGTCAAACATCCAAGGACAAACTTAGTGTACTCTGGGAACATCCAAATGTTTCAGTTAAATTCGGGTCAAGATTGAGAAAGATGTATATATTTTTCAATTATTTGACAATGGATTATAAGCTGCAGATTTCTTCTGAGAGTATATCGCGTATTGAGCTGCGCCATTCAGATGATTTAACCAAGAAGTTTCTCCTTTTTCAGTTACGCGGTGCTCCTATGATCTATGAGAAAGATGTTTCCAAAAGCAAATATTTTAAGGAGGCTTGTGACAACCATTGGTTTCGAGGGGTAGATTTCACCCCATCAAGTAGCATTGGACAATCTTCCACTCTATGTTTTGAGCTTCCACAAAGTATTGAGGTTCCAAAATTCAATCAGCATTATCGTAATTATAGTGAAGTTGATGACAGCATCTTTACTCTTGAGAAACACCTTGGTTTCTCTTCTAACTTCAAATTTGTCCCCATAGTGATCCCTCCAGAAGGCTTCAACTTGCCATACAAAATATTGTTCAAAATCAACTCATTAATTCAGCATGGATGTCTTCCTGTGCTAGCAATTGACATCAATCTTTTCCATCTAGTTGATCCTAGAAGAGTAAGGCTTGAATACATAGAAAGTGCCCTGCATAAATTAGATCAAATGAAAGAATGCTGCTATGAACCTGCACAATGGTTGGAGAAACAGTATAACAAATACTCAACAAATAGTCTAGTTCCACTATCTAGTGCTATTTCTTTAGATGATGGGTTGGTCTATGTGCATAGAGTACAAGTAACTCCATCCAAGATATATTTCTGTGGTCCTGAAGTGAACCTTTCCAATCGTGTCTTGCGCAACTATCCTGAAGACACTGATAACTTCCTTCGTGTTTCTTTTGTTGATGAGGACATGGATAAACTTCATTCAGCTGATCTAGTGCCACGTTCATCGTCTACAGATGTGGACAGAGAAACAAAGCTTCACGAGAGGGTACTGTCTACACTAAAAAATGGCATTGCAATTGGTGATAAGAAGTTTGAGTTTCTTGCCTTCTCACCGAGTCAATTGCGGGATAACTCTGTCTGGATGTTTGCATCAAGAACTGGACTTACTGCATCTGATATAAGAAAGTGGATGGGAGAGTTTCATGAAATTAGAAATGTGGCCAAATATGCAGCAAGGCTGGGTCAATCATTCAGCTCTTCCAGGGAAACAGTAAGTGTTGGCGAACATGAAATTGAAATTATTCCTGATATAGAATTAAGAAGAGGTGAAACCAAATACTGTTTCACAGATGGCATTGGGAAGATATCTTCTGAATTGGCTCAAGAAGTGGCTAAGAAATGTGGTTGTAGGGATAATAATATTCCATCAGCATTTCAAATCAGATATGGGGGGTACAAAGGTGTTGTTGCTATTGATCCTACTTCATCAACTAAACTGTCCTTAAGAAAGAGCATGTTCAAGTACAAGTCAGAAAACACAAAATTGGATGTTTTGGCATGGAGCAAATACAAACCTTGTTACCTTAATCGACAAATAATCACCCTCTTGTCCACACTCGGGGTCAAGGATCGAGTCTTCAGAAAGAAACAAAGAGAGATTCTTAATCAACTAAAAATGATATCAACAAAGCCACTGATGGTATTAGATTTGATGTTCACAGGAGAGATTACAAATATTTTAAGGGAAATGCTCATTTGTGGCTTTCATCAAACTAAGGAACCATTTCTTTCCATGATGTTGCAAACATTGTGTGCATCAAAATTACAGGAATTGCAGCTCAAAACTAGGATACTTGTTAAGAAAGGAAGAGCACTCTTAGGATGCTTAGATGAAACTAGGACATTAAAATATGGAGAGGTATTTGTGCAGATAGCTCACCAAAGAAATAAACAAATTCATGCTATGCCCTCTCTTTCTTCTAACAGATATGGAGGAAACAAGAGCAAGCATATTGTTAAAGGAAAGGTAGTTGTAGCAAAAAATCCCTGTCTGCACCCAGGAGATGTGCGCATTTTAAGAGCAGTGGATGTACCTTCCTTGCATCATATGGTGGACTGTGTTGTTTTTCCACAGAAGGGGAGAAGACCACATCCTAATGAATGTTCAGGAAGTGACTTAGATGGAGATATCTACTTTGTCAGTTGGGACCCTGATCTTATTCCTCCTCATCAGGAAAATCCCATGGATCATGCACCATCTCAAGTTATGAATGTGGATCATGATGTTACATTACAGGAAGTTCAGGAGTATTTTGCTCACTACATAGTTGAAGACAGGCTAGGAATTGTTGCAAGTGCACACACTGTCTTTGCTGATAAAGATCCAGAAAAGGCAATGAGCCCTGCATGTACTGAGCTTGCAAAGCTACACTCAATTGCAGTTGATTTTGCAAAATCTGGAGTGCCAGCAGAAATTCCACAACATCTTCGCGTGGAAGAGTATCCGGACTTCATGGAAAAGCCAGACAAACCAAGTTACCAATCAAATAGCATAATAGGGAAGCTTTATCGCGAGGTGAGGAATGTTGCACAACACAAGAATCTCAATAAGACCTTCACTAGAAGAGTGGCGAGGCAATCATATGACCCCGACATGGAGATTGATGGCTTTGAGAAGTACACGGCTACTGCTTGTGAATACAAGAACATGTATGATTTCAAGTTGGGGAACCTGATGGATTACTATGGCATAGAGACAGAAGCAGAAATAATCAGTGGCAACATCTTGAAAATGTCAAAATCCTTCAATGAAAGAAAGGATTTGGAAGGAATTAATCATGCTGTGATGTCACTAAGAAAGGAAACTAGAAGCTGGTTCAATGTGATGGTAAACAAGTCAAATTCTCAAGGTCGTGATGCCTACGCAATAGCATCAGCTTGGTACCTTGTTACATATCATCCTAGGTATTGGGGATCCTACAATCAGGGGCTGAACAGGGGTCATTTCCTCAGTTTCCCATGGTGTGTGCATGACACTCTCATCCAGATAAAGAAGGACAAAGTCAGACAGAGAACTTTTACAGTGGAGCTTTGCACAATACTGAAACTGTTTCCCATATTACTGTTTTGCTTCTTATTGTGGATGATAGTGCAATATCTAACCGATTGA
>Glyma07g26900.1 sequence type=predicted peptide gene model=Glyma07g26900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSKTIQMHGFQSNVSAEEVKKFLEKHTGHQTVHAVEVWQHKGDPTTHVDVQFTDRKSVETILLLVTQHLSYSDYVLNATEINHDIFPKPRNFPHRMDDIVVHFGCQTSKDKLSVLWEHPNVSVKFGSRLRKMYIFFNYLTMDYKLQISSESISRIELRHSDDLTKKFLLFQLRGAPMIYEKDVSKSKYFKEACDNHWFRGVDFTPSSSIGQSSTLCFELPQSIEVPKFNQHYRNYSEVDDSIFTLEKHLGFSSNFKFVPIVIPPEGFNLPYKILFKINSLIQHGCLPVLAIDINLFHLVDPRRVRLEYIESALHKLDQMKECCYEPAQWLEKQYNKYSTNSLVPLSSAISLDDGLVYVHRVQVTPSKIYFCGPEVNLSNRVLRNYPEDTDNFLRVSFVDEDMDKLHSADLVPRSSSTDVDRETKLHERVLSTLKNGIAIGDKKFEFLAFSPSQLRDNSVWMFASRTGLTASDIRKWMGEFHEIRNVAKYAARLGQSFSSSRETVSVGEHEIEIIPDIELRRGETKYCFTDGIGKISSELAQEVAKKCGCRDNNIPSAFQIRYGGYKGVVAIDPTSSTKLSLRKSMFKYKSENTKLDVLAWSKYKPCYLNRQIITLLSTLGVKDRVFRKKQREILNQLKMISTKPLMVLDLMFTGEITNILREMLICGFHQTKEPFLSMMLQTLCASKLQELQLKTRILVKKGRALLGCLDETRTLKYGEVFVQIAHQRNKQIHAMPSLSSNRYGGNKSKHIVKGKVVVAKNPCLHPGDVRILRAVDVPSLHHMVDCVVFPQKGRRPHPNECSGSDLDGDIYFVSWDPDLIPPHQENPMDHAPSQVMNVDHDVTLQEVQEYFAHYIVEDRLGIVASAHTVFADKDPEKAMSPACTELAKLHSIAVDFAKSGVPAEIPQHLRVEEYPDFMEKPDKPSYQSNSIIGKLYREVRNVAQHKNLNKTFTRRVARQSYDPDMEIDGFEKYTATACEYKNMYDFKLGNLMDYYGIETEAEIISGNILKMSKSFNERKDLEGINHAVMSLRKETRSWFNVMVNKSNSQGRDAYAIASAWYLVTYHPRYWGSYNQGLNRGHFLSFPWCVHDTLIQIKKDKVRQRTFTVELCTILKLFPILLFCFLLWMIVQYLTD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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