SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma07g26831

Feature Type:gene_model
Chromosome:Gm07
Start:29624855
stop:29649839
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma07g26831
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G14830AT Annotation by Michelle Graham. TAIR10: DYNAMIN-like 1C | chr1:5107699-5111470 REVERSE LENGTH=614 SoyBaseE_val: 0ISS
GO:0000266GO-bp Annotation by Michelle Graham. GO Biological Process: mitochondrial fission SoyBaseN/AISS
GO:0007005GO-bp Annotation by Michelle Graham. GO Biological Process: mitochondrion organization SoyBaseN/AISS
GO:0010152GO-bp Annotation by Michelle Graham. GO Biological Process: pollen maturation SoyBaseN/AISS
GO:0042732GO-bp Annotation by Michelle Graham. GO Biological Process: D-xylose metabolic process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0005938GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cell cortex SoyBaseN/AISS
GO:0009504GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cell plate SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0003924GO-mf Annotation by Michelle Graham. GO Molecular Function: GTPase activity SoyBaseN/AISS
GO:0005525GO-mf Annotation by Michelle Graham. GO Molecular Function: GTP binding SoyBaseN/AISS
KOG0446 KOG Vacuolar sorting protein VPS1, dynamin, and related proteins JGI ISS
PTHR11566Panther DYNAMIN JGI ISS
PTHR11566:SF12Panther DYNAMIN JGI ISS
PF00350PFAM Dynamin family JGI ISS
PF01031PFAM Dynamin central region JGI ISS
PF02212PFAM Dynamin GTPase effector domain JGI ISS
UniRef100_E5GB64UniRef Annotation by Michelle Graham. Most informative UniRef hit: Dynamin n=1 Tax=Cucumis melo subsp. melo RepID=E5GB64_CUCME SoyBaseE_val: 0ISS
UniRef100_I1JDI1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JDI1_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma07g26831
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g26831 not represented in the dataset
Glyma07g26831 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g26831
ParalogEvidenceComments
Glyma02g09420 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g26831 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.07g171000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma07g26831
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma07g26831
>Glyma07g26831.1   sequence type=CDS   gene model=Glyma07g26831   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGACCATGACGAGCTTGATCGGACTCATCAACAAGATCCAACGTGCGTGCACGGTGTTGGGTGACCATGGCGGCGAGGGAATGTCGCTGTGGGAGGCGCTTCCCACGGTCGCGGTGGTCGGAGGACAGAGTTCAGGGAAATCATCAGTGTTGGAAAGTGTCGTGGGAAGGGATTTTCTGCCTCGGGGATCTGGTATTGTGACACGGAGGCCACTAGTTCTGCAACTTCACAAGACAGATGATGGGCAGCAGGAATATGCTGAGTTTCTTCATGCATCAAGAAAGAGATTCACTGACTTTGCTGCTGTGAGACAGGAAATTTCAGATGAAACAGATCGTATAACTGGGAAGACAAAGGCAATTTCAAACGTTCCAATTCAACTGAGCATATATTCTCCAAATGTTGTGAACTTAACCCTCATAGACCTTCCTGGGTTGACAAAGGTTGCTGTAGAGGGACAATCAGACACCATTGTTCAAGATATTGAGAACATGGTCCGTTCCTATGTTGAGAAGCCCAATTGCATTATATTGGCCATCTCTCCTGCAAACCAAGATATTGCCACTTCAGATGCAATAAAAATTGCAAGAGAAGTTGATCCTTCTGGTGAAAGGACATTTGGGGTGGTTACAAAACTTGATCTTATGGATAAAGGAACTAATGCTGTTGAGGTTCTCGAAGGAAGGCAATACAGGTTGAAACATCCTTGGGTTGGAATTGTCAATCGTTCACAAGCTGATATTAATAAAAACGTTGACATGATTGTCGCTCGCAAGAAGGAACGCGAATATTTTGAGACTAGTCCTGAATATGGACATTTGGCACATAAAATGGGGGCAGAATATCTTGCCAAACTTCTATCAGAGCATTTGGAGTATGTTATTAGGATGAAGATACCTAGTATCATTTCCTTAATAAATAAAGCAATTGATGAGCTTAATGCAGAGTTGGACCGAATTGGCAGGCCAATAGCTGTGGATTCAGGGGCCAAATTATACACAATTTTACAGATGTGTCGAGCATTTGACAAAGTATTTAAAGAACACCTGGATGGAGGACGTCCTGGCGGGGATAGAATATATGGTGTTTTTGACCACCAATTACCAGCTGCTTTAAAAAAGCTCCCATTTAATCGCCATCTTTCCTTAAAGAATGTCGAAAAAGTTGTTATGGAAGCGGATGGTTATCAGCCACATCTAATTGCTCCAGAGCAAGGATATAGAAGACTTATTGAGGGATCTATTGGCTATTTCAAAGGCCCAGCTGAAGCCTCTGTGGATGCTGTACATCTCATTTTAAAGGAGCTTGTACGGAAGTCAATTGCAGCAACTGAGGAATTGAAGAGGTTTCCAACCCTTCAGGCTGATATAGCTGCTGCTGCAAATGATGCTTTAGAACGATTCCGAGAAGAAAGTAGGAGGACTGTGACCCGGATGGTTGATATGGAGTCTGGCTATCTAACAGTGGAATTTTTTCGGAAGATGCATCTTGAACCGGAAAAGAACGCAGATCAAAAGAACCCCAATCGGAGTAATCCTAATCCACCTGTAGACAGTTACACAGATAATCACCTCAGTAAAATTGGATCAAATGTTAATGGTTATATCAACATGGTTTTGGATACACTCAAAAATTCAATACCAAAAGCCGTGGTTCATTGTCAAGTTAGAGAGGCAAAGAGATCATTGCTTAACCATTTTTATGTTCAAGTTGGGAAGAGAGAGAAGGATCAATTGGGGGCTTTGTTGGATGAAGACCCTGCACTTATGGAAAAGAGAGCACAACTAGCTAAAAGGCTTGAATTGTACAAGCAAGCTATGGATGATATTAACTCTGTGGCTTGGAATAAATAA
Predicted protein sequences of Glyma07g26831
>Glyma07g26831.1   sequence type=predicted peptide   gene model=Glyma07g26831   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATMTSLIGLINKIQRACTVLGDHGGEGMSLWEALPTVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTDDGQQEYAEFLHASRKRFTDFAAVRQEISDETDRITGKTKAISNVPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQSDTIVQDIENMVRSYVEKPNCIILAISPANQDIATSDAIKIAREVDPSGERTFGVVTKLDLMDKGTNAVEVLEGRQYRLKHPWVGIVNRSQADINKNVDMIVARKKEREYFETSPEYGHLAHKMGAEYLAKLLSEHLEYVIRMKIPSIISLINKAIDELNAELDRIGRPIAVDSGAKLYTILQMCRAFDKVFKEHLDGGRPGGDRIYGVFDHQLPAALKKLPFNRHLSLKNVEKVVMEADGYQPHLIAPEQGYRRLIEGSIGYFKGPAEASVDAVHLILKELVRKSIAATEELKRFPTLQADIAAAANDALERFREESRRTVTRMVDMESGYLTVEFFRKMHLEPEKNADQKNPNRSNPNPPVDSYTDNHLSKIGSNVNGYINMVLDTLKNSIPKAVVHCQVREAKRSLLNHFYVQVGKREKDQLGALLDEDPALMEKRAQLAKRLELYKQAMDDINSVAWNK*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo